Variant report

Variant	rs2676517
Chromosome Location	chr2:173749682-173749683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1344591	0.81[ASW][hapmap]
rs1991173	0.94[ASW][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.91[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1991174	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676520	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173726800-173753600	Weak transcription	Brain Angular Gyrus	brain
2	chr2:173742600-173755000	Weak transcription	Left Ventricle	heart
3	chr2:173743000-173756400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:173748600-173750000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:173748600-173750000	Enhancers	NHEK	skin
6	chr2:173748600-173750200	Enhancers	HSMMtube	muscle
7	chr2:173748800-173750600	Weak transcription	Gastric	stomach
8	chr2:173748800-173750800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:173749200-173750800	Enhancers	Fetal Muscle Leg	muscle
10	chr2:173749600-173750000	Enhancers	Fetal Muscle Trunk	muscle
11	chr2:173749600-173750600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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