Variant report

Variant	rs1994176
Chromosome Location	chr3:25453857-25453858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1351781	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1483826	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1483827	0.82[EUR][1000 genomes]
rs1897500	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1897501	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1991788	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2014178	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2364118	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4681021	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4681023	0.84[EUR][1000 genomes]
rs7615918	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25451400-25454400	Enhancers	Fetal Intestine Large	intestine
2	chr3:25451600-25454200	Enhancers	Stomach Mucosa	stomach
3	chr3:25451600-25454400	Enhancers	Fetal Intestine Small	intestine
4	chr3:25451800-25454000	Enhancers	HepG2	liver
5	chr3:25452600-25454200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:25453200-25454000	Enhancers	HUVEC	blood vessel
7	chr3:25453400-25460600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:25453600-25454200	Flanking Active TSS	A549	lung
9	chr3:25453600-25458200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:25453800-25454000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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