Variant report

Variant	rs2364118
Chromosome Location	chr3:25451461-25451462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1351781	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1483826	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1483827	0.84[EUR][1000 genomes]
rs1897500	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1897501	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1991788	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1994176	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2014178	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4681021	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4681023	0.84[EUR][1000 genomes]
rs7615918	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv524030	chr3:25450943-25453181	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25449800-25451600	Weak transcription	Fetal Intestine Small	intestine
2	chr3:25450200-25451600	Weak transcription	Stomach Mucosa	stomach
3	chr3:25451400-25454400	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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