Variant report

Variant	rs1994733
Chromosome Location	chr3:111732762-111732763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:111436392..111436951-chr3:111732026..111733001,2	MCF-7	breast:
2	chr3:111707181..111708579-chr3:111732079..111732869,9	MCF-7	breast:
3	chr3:111725243..111727215-chr3:111731886..111733831,2	K562	blood:
4	chr3:111432765..111433737-chr3:111732299..111732933,2	MCF-7	breast:
5	chr3:111613697..111614199-chr3:111732456..111733004,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240891	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1530342	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1844927	0.81[AFR][1000 genomes]
rs35905442	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6765160	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6805442	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7624767	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7641758	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7644087	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs981268	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111720200-111752800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:111724400-111734200	Weak transcription	NH-A	brain
3	chr3:111724600-111734400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:111727600-111733200	Strong transcription	Brain Germinal Matrix	brain
5	chr3:111728400-111734000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:111729400-111732800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr3:111729600-111733800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:111730400-111735600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:111730800-111732800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:111730800-111734400	Weak transcription	HMEC	breast
11	chr3:111731000-111736000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:111731000-111739200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:111731600-111733000	Enhancers	Aorta	Aorta
14	chr3:111731600-111733200	Enhancers	Osteobl	bone
15	chr3:111731800-111733000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr3:111732000-111732800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr3:111732000-111732800	Enhancers	Fetal Intestine Small	intestine
18	chr3:111732000-111733000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:111732200-111732800	Enhancers	Primary B cells from peripheral blood	blood
20	chr3:111732200-111732800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:111732200-111733000	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr3:111732200-111733000	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr3:111732200-111733000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr3:111732200-111733000	Strong transcription	Fetal Brain Female	brain
25	chr3:111732200-111733400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr3:111732200-111733400	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:111732400-111732800	Enhancers	Primary T cells from cord blood	blood
28	chr3:111732400-111732800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:111732400-111732800	Enhancers	HUVEC	blood vessel
30	chr3:111732400-111733000	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr3:111732400-111733000	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr3:111732400-111733200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:111732400-111736000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:111732400-111737200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr3:111732600-111732800	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr3:111732600-111732800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr3:111732600-111732800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr3:111732600-111732800	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr3:111732600-111733400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:111732600-111733800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr3:111732600-111734200	Weak transcription	Fetal Brain Male	brain
42	chr3:111732600-111734200	Weak transcription	Fetal Lung	lung
43	chr3:111732600-111736400	Weak transcription	Pancreas	Pancrea
44	chr3:111732600-111738000	Weak transcription	Adipose Nuclei	Adipose
45	chr3:111732600-111741600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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