Variant report

Variant	rs35905442
Chromosome Location	chr3:111731529-111731530
allele	GG/TA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1530342	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1994733	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6765160	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6805442	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7624767	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7641758	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7644087	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs981268	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111718400-111732200	Weak transcription	Lung	lung
2	chr3:111720200-111752800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:111720800-111732200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:111721800-111732200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:111722000-111732200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:111722600-111732600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:111723000-111732200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:111723000-111732200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:111724000-111732000	Weak transcription	Fetal Intestine Small	intestine
10	chr3:111724400-111732000	Weak transcription	Fetal Intestine Large	intestine
11	chr3:111724400-111734200	Weak transcription	NH-A	brain
12	chr3:111724600-111734400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:111726600-111732200	Weak transcription	Fetal Brain Male	brain
14	chr3:111727400-111732000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:111727600-111733200	Strong transcription	Brain Germinal Matrix	brain
16	chr3:111728000-111732000	Weak transcription	Ovary	ovary
17	chr3:111728000-111732200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:111728200-111731600	Weak transcription	Aorta	Aorta
19	chr3:111728400-111732400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr3:111728400-111734000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:111729000-111731800	Enhancers	Fetal Lung	lung
22	chr3:111729000-111732400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:111729200-111732200	Enhancers	Adipose Nuclei	Adipose
24	chr3:111729400-111732800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr3:111729600-111733800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:111730000-111731600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:111730000-111731600	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr3:111730000-111731600	Weak transcription	Osteobl	bone
29	chr3:111730200-111732200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:111730400-111732400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:111730400-111732400	Enhancers	Fetal Heart	heart
32	chr3:111730400-111732600	Enhancers	Stomach Mucosa	stomach
33	chr3:111730400-111735600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr3:111730600-111731600	Weak transcription	Brain Angular Gyrus	brain
35	chr3:111730600-111732200	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr3:111730800-111731600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr3:111730800-111731800	Weak transcription	Brain Substantia Nigra	brain
38	chr3:111730800-111732000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr3:111730800-111732000	Weak transcription	Fetal Muscle Trunk	muscle
40	chr3:111730800-111732000	Weak transcription	Gastric	stomach
41	chr3:111730800-111732200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr3:111730800-111732400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:111730800-111732600	Enhancers	HSMM	muscle
44	chr3:111730800-111732800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr3:111730800-111734400	Weak transcription	HMEC	breast
46	chr3:111731000-111731600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr3:111731000-111731800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:111731000-111731800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr3:111731000-111732000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:111731000-111732000	Weak transcription	Brain Inferior Temporal Lobe	brain

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