Variant report

Variant	rs1995931
Chromosome Location	chr4:144340560-144340561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144333094..144335464-chr4:144340253..144342469,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11725272	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11936966	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11945261	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12512923	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.82[TSI][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13112122	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13112412	0.87[ASN][1000 genomes]
rs13128753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.82[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17017801	0.85[JPT][hapmap]
rs28925907	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28925939	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35152330	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4690785	0.85[CEU][hapmap];0.88[CHD][hapmap];0.88[MEX][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6837464	0.83[ASN][1000 genomes]
rs7698825	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9684453	0.81[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144318200-144362400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:144327800-144361200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:144327800-144388200	Weak transcription	HepG2	liver
4	chr4:144328000-144346400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:144328000-144359200	Weak transcription	Esophagus	oesophagus
6	chr4:144329000-144359400	Weak transcription	K562	blood
7	chr4:144329800-144352600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:144332400-144359200	Weak transcription	Pancreas	Pancrea
9	chr4:144332800-144359200	Weak transcription	HMEC	breast
10	chr4:144333000-144346200	Weak transcription	Ovary	ovary
11	chr4:144333000-144346400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:144333000-144358800	Weak transcription	Right Ventricle	heart
13	chr4:144333000-144364600	Weak transcription	NHEK	skin
14	chr4:144333200-144341200	Weak transcription	HSMM	muscle
15	chr4:144333200-144350600	Weak transcription	NHDF-Ad	bronchial
16	chr4:144333400-144346400	Weak transcription	Gastric	stomach
17	chr4:144333400-144350800	Weak transcription	Fetal Brain Male	brain
18	chr4:144333400-144359400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:144333400-144362400	Weak transcription	NH-A	brain
20	chr4:144333600-144342400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:144333600-144347800	Weak transcription	Fetal Brain Female	brain
22	chr4:144333600-144359800	Weak transcription	HSMMtube	muscle
23	chr4:144333800-144348000	Weak transcription	Brain Germinal Matrix	brain
24	chr4:144333800-144348600	Weak transcription	Aorta	Aorta
25	chr4:144333800-144350600	Weak transcription	NHLF	lung
26	chr4:144334000-144342400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr4:144334000-144359400	Weak transcription	HUVEC	blood vessel
28	chr4:144334400-144342600	Weak transcription	Hela-S3	cervix
29	chr4:144336400-144345400	Weak transcription	Osteobl	bone
30	chr4:144336400-144392200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:144337000-144350600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr4:144337800-144340600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr4:144338200-144350400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr4:144338400-144343600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:144338400-144344200	Enhancers	Fetal Heart	heart
36	chr4:144338400-144346400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr4:144338600-144345200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:144338600-144345200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:144338600-144346200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:144338600-144359200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr4:144339200-144341600	Weak transcription	Fetal Kidney	kidney
42	chr4:144339200-144346400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr4:144339400-144341200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr4:144339400-144345200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr4:144339400-144345800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr4:144339400-144345800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:144339400-144345800	Weak transcription	Fetal Intestine Small	intestine
48	chr4:144339400-144346000	Weak transcription	Fetal Stomach	stomach
49	chr4:144339400-144346200	Weak transcription	Left Ventricle	heart
50	chr4:144339400-144346200	Weak transcription	Lung	lung

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