Variant report

Variant	rs4690785
Chromosome Location	chr4:144340098-144340099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11725272	0.82[AMR][1000 genomes]
rs11933502	0.81[CEU][hapmap]
rs11936966	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11945261	0.83[AMR][1000 genomes]
rs12512923	0.85[CEU][hapmap];0.82[CHD][hapmap];0.94[MEX][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13112122	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13112412	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13114896	0.81[CEU][hapmap]
rs13128753	0.85[CEU][hapmap];0.88[CHD][hapmap];0.94[MEX][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1397529	0.80[CEU][hapmap]
rs17017757	0.81[CHB][hapmap]
rs17017801	0.81[CEU][hapmap]
rs1995931	0.85[CEU][hapmap];0.88[CHD][hapmap];0.88[MEX][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28925907	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28925939	0.82[AMR][1000 genomes]
rs35152330	0.83[AMR][1000 genomes]
rs3795246	0.81[CEU][hapmap]
rs6837464	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7696619	0.81[CEU][hapmap]
rs7698825	0.92[CEU][hapmap];0.94[CHD][hapmap];0.81[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4690785	ZNF827	cis	parietal	SCAN

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144318200-144362400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:144327800-144361200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:144327800-144388200	Weak transcription	HepG2	liver
4	chr4:144328000-144346400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:144328000-144359200	Weak transcription	Esophagus	oesophagus
6	chr4:144329000-144359400	Weak transcription	K562	blood
7	chr4:144329800-144352600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:144332400-144359200	Weak transcription	Pancreas	Pancrea
9	chr4:144332800-144359200	Weak transcription	HMEC	breast
10	chr4:144333000-144346200	Weak transcription	Ovary	ovary
11	chr4:144333000-144346400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:144333000-144358800	Weak transcription	Right Ventricle	heart
13	chr4:144333000-144364600	Weak transcription	NHEK	skin
14	chr4:144333200-144341200	Weak transcription	HSMM	muscle
15	chr4:144333200-144350600	Weak transcription	NHDF-Ad	bronchial
16	chr4:144333400-144346400	Weak transcription	Gastric	stomach
17	chr4:144333400-144350800	Weak transcription	Fetal Brain Male	brain
18	chr4:144333400-144359400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:144333400-144362400	Weak transcription	NH-A	brain
20	chr4:144333600-144342400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:144333600-144347800	Weak transcription	Fetal Brain Female	brain
22	chr4:144333600-144359800	Weak transcription	HSMMtube	muscle
23	chr4:144333800-144348000	Weak transcription	Brain Germinal Matrix	brain
24	chr4:144333800-144348600	Weak transcription	Aorta	Aorta
25	chr4:144333800-144350600	Weak transcription	NHLF	lung
26	chr4:144334000-144342400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr4:144334000-144359400	Weak transcription	HUVEC	blood vessel
28	chr4:144334400-144342600	Weak transcription	Hela-S3	cervix
29	chr4:144336400-144340200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:144336400-144345400	Weak transcription	Osteobl	bone
31	chr4:144336400-144392200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr4:144336600-144340200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:144336600-144340200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:144336600-144340200	Strong transcription	Fetal Lung	lung
35	chr4:144336600-144340200	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr4:144337000-144340200	Strong transcription	Fetal Intestine Large	intestine
37	chr4:144337000-144350600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr4:144337200-144340200	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr4:144337800-144340600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr4:144338200-144350400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr4:144338400-144343600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr4:144338400-144344200	Enhancers	Fetal Heart	heart
43	chr4:144338400-144346400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr4:144338600-144340200	Enhancers	Primary B cells from peripheral blood	blood
45	chr4:144338600-144345200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr4:144338600-144345200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:144338600-144346200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr4:144338600-144359200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr4:144339000-144340200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr4:144339200-144341600	Weak transcription	Fetal Kidney	kidney

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