Variant report

Variant	rs1997664
Chromosome Location	chr1:169574166-169574167
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2142760	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2205896	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2223303	0.87[ASN][1000 genomes]
rs2420378	0.90[ASN][1000 genomes]
rs3766126	0.87[ASN][1000 genomes]
rs3917750	0.82[ASN][1000 genomes]
rs3917751	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3917768	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917775	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917777	0.90[ASN][1000 genomes]
rs3917782	0.93[ASN][1000 genomes]
rs3917783	0.93[ASN][1000 genomes]
rs3917786	0.93[ASN][1000 genomes]
rs6127	0.93[ASN][1000 genomes]
rs760694	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv872538	chr1:169567516-169576207	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169565400-169581400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:169569800-169576400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr1:169570000-169574400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr1:169570200-169575200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:169570200-169575400	Enhancers	Primary B cells from peripheral blood	blood
6	chr1:169570200-169576400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr1:169570400-169574200	Enhancers	Primary T cells fromperipheralblood	blood
8	chr1:169570400-169574200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:169570400-169574400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:169570400-169576600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr1:169570400-169585400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr1:169573600-169575000	Enhancers	Primary hematopoietic stem cells	blood
13	chr1:169573600-169575000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr1:169573600-169575400	Enhancers	Fetal Thymus	thymus
15	chr1:169573600-169576400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:169573800-169574200	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr1:169573800-169574200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:169573800-169574400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr1:169573800-169574600	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr1:169573800-169574600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr1:169573800-169574600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:169573800-169574800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr1:169573800-169574800	Flanking Active TSS	Dnd41	blood
24	chr1:169573800-169574800	Enhancers	GM12878-XiMat	blood
25	chr1:169573800-169575000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr1:169574000-169574400	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr1:169574000-169574600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr1:169574000-169574600	Enhancers	HepG2	liver
29	chr1:169574000-169574800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:169574000-169574800	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr1:169574000-169574800	Enhancers	Thymus	Thymus
32	chr1:169574000-169575400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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