Variant report

Variant	rs6127
Chromosome Location	chr1:169566313-169566314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10753787	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10800457	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1997664	0.93[ASN][1000 genomes]
rs2142760	0.93[ASN][1000 genomes]
rs2205896	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223303	0.81[ASN][1000 genomes]
rs2420378	0.84[ASN][1000 genomes]
rs3753305	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3766126	0.81[ASN][1000 genomes]
rs3917768	0.93[ASN][1000 genomes]
rs3917775	0.93[ASN][1000 genomes]
rs3917777	0.84[ASN][1000 genomes]
rs3917782	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917783	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917786	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6427202	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6670678	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7540556	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs760694	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6127	METTL13	cis	parietal	SCAN
rs6127	DNAJB6	trans	parietal	SCAN
rs6127	PBX1	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169558800-169570000	Weak transcription	Primary T cells from cord blood	blood
2	chr1:169559200-169570400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:169564000-169570200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr1:169564400-169569800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:169565200-169566600	Enhancers	Adipose Nuclei	Adipose
6	chr1:169565200-169570400	Weak transcription	GM12878-XiMat	blood
7	chr1:169565400-169581400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:169565600-169566600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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