Variant report

Variant	rs199813
Chromosome Location	chr20:22318827-22318828
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11699698	0.96[ASN][1000 genomes]
rs169231	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs169232	0.81[ASN][1000 genomes]
rs17753094	0.98[ASN][1000 genomes]
rs191830	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs199812	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4393808	0.96[ASN][1000 genomes]
rs4815109	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4815110	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6137606	0.96[ASN][1000 genomes]
rs6137607	0.80[ASN][1000 genomes]
rs6137608	0.96[ASN][1000 genomes]
rs6137609	0.80[ASN][1000 genomes]
rs6137610	0.98[ASN][1000 genomes]
rs7263317	0.96[ASN][1000 genomes]
rs7263509	0.96[ASN][1000 genomes]
rs7271129	0.96[ASN][1000 genomes]
rs7271196	0.96[ASN][1000 genomes]
rs927170	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833942	chr20:22283122-22440749	Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22315000-22320600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22315400-22319600	Weak transcription	A549	lung
3	chr20:22318200-22319400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:22318600-22322600	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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