Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:22314644..22316246-chr20:22664404..22666027,2	MCF-7	breast:
2	chr20:22314539..22315539-chr20:22664374..22664885,2	K562	blood:
3	chr20:22314563..22315271-chr20:22704025..22704741,2	MCF-7	breast:
4	chr20:22314524..22315506-chr20:22664222..22666071,6	MCF-7	breast:
5	chr20:22314464..22315391-chr20:22433596..22434509,2	MCF-7	breast:
6	chr20:22314477..22315701-chr20:22664224..22666112,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230400	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11699698	1.00[ASN][1000 genomes]
rs169231	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs17753094	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs191830	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs199812	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs199813	0.96[ASN][1000 genomes]
rs4393808	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815109	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4815110	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6137606	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6137607	0.84[ASN][1000 genomes]
rs6137608	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6137609	0.84[ASN][1000 genomes]
rs6137610	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6515231	0.92[GIH][hapmap]
rs7263317	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7263509	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7267431	0.82[ASN][1000 genomes]
rs7271129	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7271196	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833942	chr20:22283122-22440749	Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22314400-22315400	Enhancers	Liver	Liver
2	chr20:22314800-22315000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:22314800-22315000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
4	chr20:22314800-22315000	Active TSS	A549	lung

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