Variant report

Variant	rs1998254
Chromosome Location	chr14:40434651-40434652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10134529	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10135401	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10139130	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10150979	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10151173	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10220364	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1157666	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1157667	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850290	1.00[ASN][1000 genomes]
rs11851283	1.00[ASN][1000 genomes]
rs17092098	1.00[ASN][1000 genomes]
rs17109971	1.00[ASN][1000 genomes]
rs17109976	1.00[ASN][1000 genomes]
rs17109992	1.00[ASN][1000 genomes]
rs1951324	1.00[ASN][1000 genomes]
rs1951334	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957223	1.00[ASN][1000 genomes]
rs1957227	1.00[ASN][1000 genomes]
rs2415569	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28813996	1.00[ASN][1000 genomes]
rs2899897	1.00[ASN][1000 genomes]
rs4134257	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4548776	1.00[ASN][1000 genomes]
rs55660421	1.00[ASN][1000 genomes]
rs55857895	0.93[EUR][1000 genomes]
rs55929735	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56380567	1.00[ASN][1000 genomes]
rs57214743	1.00[ASN][1000 genomes]
rs58733214	1.00[ASN][1000 genomes]
rs61144770	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7144491	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530658	chr14:40214958-40734070	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2751272	chr14:40216880-40913230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1047949	chr14:40307360-40474579	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv901661	chr14:40410765-40580535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2751273	chr14:40412795-40586449	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1043280	chr14:40416845-40590110	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:40434400-40435200	Enhancers	HepG2	liver

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