Variant report

Variant	rs2899897
Chromosome Location	chr14:40347578-40347579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:40347440..40349018-chr14:40350827..40353513,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10134529	1.00[ASN][1000 genomes]
rs10135401	1.00[ASN][1000 genomes]
rs10139130	1.00[ASN][1000 genomes]
rs10150979	1.00[ASN][1000 genomes]
rs10151173	1.00[ASN][1000 genomes]
rs10220364	1.00[ASN][1000 genomes]
rs1157666	1.00[ASN][1000 genomes]
rs1157667	1.00[ASN][1000 genomes]
rs11850290	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851283	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092098	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109971	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109976	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1951324	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1951326	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1951334	1.00[ASN][1000 genomes]
rs1957223	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957227	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998254	1.00[ASN][1000 genomes]
rs2415569	1.00[ASN][1000 genomes]
rs28813996	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4134257	1.00[ASN][1000 genomes]
rs4548776	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55660421	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55929735	1.00[ASN][1000 genomes]
rs56380567	1.00[ASN][1000 genomes]
rs57214743	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58733214	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61144770	1.00[ASN][1000 genomes]
rs7144491	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530658	chr14:40214958-40734070	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2751272	chr14:40216880-40913230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv525070	chr14:40302876-40353756	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv901660	chr14:40302876-40410765	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1047949	chr14:40307360-40474579	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:40333400-40348600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:40344200-40350400	Weak transcription	Fetal Intestine Small	intestine
3	chr14:40345600-40347600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr14:40345600-40348800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:40346400-40347600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:40346400-40350000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr14:40346400-40358000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:40346600-40347600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr14:40346600-40348200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr14:40347000-40347600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:40347400-40348400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:40347400-40348600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:40347400-40349000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr14:40347400-40349200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:40347400-40349200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr14:40347400-40349600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr14:40347400-40349600	Weak transcription	Fetal Kidney	kidney
18	chr14:40347400-40354800	Weak transcription	Fetal Intestine Large	intestine

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