Variant report
| Variant | rs200020 |
|---|---|
| Chromosome Location | chr5:8693018-8693019 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs200012 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200015 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200017 | 0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200018 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs200036 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200037 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200038 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200039 | 0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200040 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200043 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200044 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200046 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200047 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200049 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200050 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200053 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200066 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs200069 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2519880 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2651645 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032346 | chr5:8522331-8747061 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv537636 | chr5:8522331-8747061 | Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1033498 | chr5:8554438-8702228 | Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv537637 | chr5:8690735-8730509 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:8693000-8697600 | Enhancers | Fetal Lung | lung |
