Variant report

Variant	rs2001655
Chromosome Location	chr11:120463699-120463700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11217918	0.96[ASN][1000 genomes]
rs11602493	1.00[ASN][1000 genomes]
rs12273026	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12273031	0.96[ASN][1000 genomes]
rs12279396	0.96[ASN][1000 genomes]
rs12295741	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4278519	0.84[ASN][1000 genomes]
rs4447186	0.91[ASN][1000 genomes]
rs4500499	1.00[ASN][1000 genomes]
rs61201354	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1054301	chr11:120396485-120465800	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1036102	chr11:120442895-120498908	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120437200-120468000	Weak transcription	Right Atrium	heart
2	chr11:120460800-120467600	Weak transcription	Fetal Brain Male	brain
3	chr11:120461400-120468200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:120461600-120467800	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:120462200-120467800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:120462800-120467800	Weak transcription	Fetal Lung	lung
7	chr11:120463000-120467800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:120463200-120464000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:120463200-120465800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:120463200-120467800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:120463200-120468200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:120463200-120470200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:120463200-120470400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:120463400-120467800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:120463400-120470200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:120463400-120470800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:120463600-120464000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links