Variant report

Variant	rs2002625
Chromosome Location	chr21:16501314-16501315
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2011751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2011752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61121249	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62218213	0.94[EUR][1000 genomes]
rs62218214	0.91[EUR][1000 genomes]
rs62218216	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8127954	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8134766	0.94[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16494200-16502600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr21:16494400-16502800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr21:16499800-16502600	Weak transcription	Fetal Muscle Leg	muscle
4	chr21:16499800-16506400	Weak transcription	Left Ventricle	heart
5	chr21:16500200-16501400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr21:16500200-16501400	Enhancers	Primary B cells from cord blood	blood
7	chr21:16500200-16501800	Enhancers	Primary B cells from peripheral blood	blood
8	chr21:16500400-16505800	Weak transcription	Small Intestine	intestine
9	chr21:16500600-16502000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr21:16500600-16510800	Weak transcription	Psoas Muscle	Psoas
11	chr21:16500800-16502200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr21:16500800-16505800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr21:16501200-16506000	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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