Variant report

Variant	rs62218216
Chromosome Location	chr21:16506386-16506387
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2002625	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2011751	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2011752	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2142366	0.81[EUR][1000 genomes]
rs61121249	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62218213	0.94[EUR][1000 genomes]
rs62218214	0.96[EUR][1000 genomes]
rs62218215	0.83[EUR][1000 genomes]
rs8127954	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8134766	0.94[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16499800-16506400	Weak transcription	Left Ventricle	heart
2	chr21:16500600-16510800	Weak transcription	Psoas Muscle	Psoas
3	chr21:16501800-16506600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr21:16502200-16506600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr21:16503000-16507200	Weak transcription	HMEC	breast
6	chr21:16504000-16509400	Weak transcription	Fetal Muscle Leg	muscle
7	chr21:16504200-16507400	Enhancers	Placenta	Placenta
8	chr21:16504600-16509400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr21:16504800-16507000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr21:16505600-16508000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr21:16505800-16507400	Enhancers	K562	blood
12	chr21:16505800-16508000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr21:16505800-16509000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr21:16505800-16509000	Enhancers	Duodenum Mucosa	Duodenum
15	chr21:16506000-16506600	Weak transcription	Small Intestine	intestine
16	chr21:16506000-16506600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr21:16506000-16509000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr21:16506200-16506800	Flanking Active TSS	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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