Variant report

Variant	rs200356337
Chromosome Location	chr9:110020822-110020823
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110017405..110019153-chr9:110019371..110020959,2	MCF-7	breast:
2	chr9:110015966..110018595-chr9:110020108..110022273,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3508199	chr9:110017856-110022181	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv3438347	chr9:110017900-110021197	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3482659	chr9:110018154-110020956	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3508200	chr9:110018167-110020954	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3508201	chr9:110018196-110020887	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3482657	chr9:110018224-110020876	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3508198	chr9:110018226-110020896	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3508196	chr9:110018237-110020957	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3068	chr9:110018239-110020923	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3334091	chr9:110018245-110020874	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3482658	chr9:110018264-110020853	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3323169	chr9:110018272-110020920	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3482660	chr9:110018278-110020858	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3508202	chr9:110018278-110020858	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3379414	chr9:110018656-110021504	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	esv3398203	chr9:110019231-110021629	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110007000-110022600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:110012400-110022600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:110014800-110021400	Weak transcription	Adipose Nuclei	Adipose
4	chr9:110014800-110022800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:110015400-110022600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:110017200-110022600	Weak transcription	HSMMtube	muscle
7	chr9:110018200-110022400	Weak transcription	HepG2	liver
8	chr9:110020800-110022600	Weak transcription	NHDF-Ad	bronchial

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