Variant report

Variant	rs2004508
Chromosome Location	chr6:5852150-5852151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13191588	0.83[AMR][1000 genomes]
rs17145829	0.84[EUR][1000 genomes]
rs6932378	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9378988	0.81[AMR][1000 genomes]
rs9405876	0.83[AMR][1000 genomes]
rs9502354	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5850800-5852200	Active TSS	Brain Cingulate Gyrus	brain
2	chr6:5850800-5852200	Active TSS	Fetal Brain Female	brain
3	chr6:5850800-5852400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:5851000-5852200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:5851000-5852200	Active TSS	Primary T cells from cord blood	blood
6	chr6:5851000-5852200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr6:5851000-5852200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr6:5851000-5852200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:5851000-5852200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:5851000-5852200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:5851000-5852200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:5851000-5852200	Active TSS	Brain Substantia Nigra	brain
13	chr6:5851000-5852400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
14	chr6:5851000-5852400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
15	chr6:5851000-5852400	Active TSS	Brain Anterior Caudate	brain
16	chr6:5851200-5852200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr6:5851200-5852200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr6:5851200-5852200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:5851200-5852200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr6:5851200-5852200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
21	chr6:5851200-5852200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:5851200-5852200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:5851200-5852200	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr6:5851200-5852200	Active TSS	Brain Angular Gyrus	brain
25	chr6:5851200-5852200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
26	chr6:5851200-5852200	Bivalent/Poised TSS	GM12878-XiMat	blood
27	chr6:5851200-5852400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
28	chr6:5851200-5852400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
29	chr6:5851400-5852200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:5851400-5852200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:5851400-5852200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:5851400-5852400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:5851600-5852200	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:5851600-5852200	Active TSS	Brain Germinal Matrix	brain
35	chr6:5851600-5852200	Bivalent/Poised TSS	A549	lung
36	chr6:5851800-5852200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
37	chr6:5851800-5852200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
38	chr6:5851800-5852200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:5851800-5852200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
40	chr6:5851800-5852200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr6:5851800-5852200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
42	chr6:5851800-5852200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
43	chr6:5851800-5852400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
44	chr6:5852000-5852200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:5852000-5852200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:5852000-5852200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:5852000-5852200	Enhancers	Primary B cells from cord blood	blood
48	chr6:5852000-5852200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:5852000-5852200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
50	chr6:5852000-5852200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

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