Variant report

Variant	rs13191588
Chromosome Location	chr6:5835090-5835091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11961267	0.81[EUR][1000 genomes]
rs13204941	0.81[EUR][1000 genomes]
rs13205062	0.81[EUR][1000 genomes]
rs13205213	0.81[EUR][1000 genomes]
rs13208150	0.81[EUR][1000 genomes]
rs13218554	0.81[EUR][1000 genomes]
rs13218657	0.81[EUR][1000 genomes]
rs13218815	0.81[EUR][1000 genomes]
rs13218954	0.81[EUR][1000 genomes]
rs13219208	0.81[EUR][1000 genomes]
rs13219593	0.81[EUR][1000 genomes]
rs13219662	0.86[EUR][1000 genomes]
rs13219875	0.81[EUR][1000 genomes]
rs13219882	0.81[EUR][1000 genomes]
rs13220220	0.81[EUR][1000 genomes]
rs1359052	0.94[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1407795	0.81[EUR][1000 genomes]
rs1819201	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1830685	0.84[EUR][1000 genomes]
rs1830687	0.80[EUR][1000 genomes]
rs1830688	0.80[EUR][1000 genomes]
rs2004508	0.83[AMR][1000 genomes]
rs35541713	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35636471	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4370407	0.80[EUR][1000 genomes]
rs4604310	0.81[EUR][1000 genomes]
rs57758371	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6932378	0.84[AMR][1000 genomes]
rs6934706	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6941973	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9378988	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9392718	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9405873	0.81[EUR][1000 genomes]
rs9405875	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9405876	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9502354	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9504540	0.86[EUR][1000 genomes]
rs9504542	0.85[EUR][1000 genomes]
rs9504546	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv970075	chr6:5829270-5841514	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5832200-5840400	Weak transcription	Right Atrium	heart
2	chr6:5834000-5840800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:5835000-5840800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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