Variant report

Variant	rs1830685
Chromosome Location	chr6:5827598-5827599
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11757934	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11961267	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13191588	0.84[EUR][1000 genomes]
rs13204941	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13205062	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13205213	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13208150	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13208229	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13218554	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13218657	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13218815	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13218954	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13219208	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13219593	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13219662	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13219875	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13219882	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13220220	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1359052	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1407795	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1819201	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1830686	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1830687	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1830688	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35541713	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35636471	0.82[EUR][1000 genomes]
rs4370407	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4604310	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57758371	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59550778	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6934706	0.82[EUR][1000 genomes]
rs6941973	0.81[EUR][1000 genomes]
rs9378987	0.88[ASN][1000 genomes]
rs9378988	0.85[EUR][1000 genomes]
rs9392716	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9392718	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9405873	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9405874	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9405876	0.82[EUR][1000 genomes]
rs9502354	0.82[EUR][1000 genomes]
rs9504540	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9504542	0.93[EUR][1000 genomes]
rs9504546	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5817200-5828000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:5825000-5827600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:5825000-5828800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:5825000-5829000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:5825000-5829400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:5825000-5832000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:5825200-5828800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:5825400-5830600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:5825400-5830600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:5825600-5828000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:5825600-5828600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:5825600-5828800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:5826600-5831600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr6:5827200-5827600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:5827200-5827600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:5827200-5827600	Enhancers	Brain Germinal Matrix	brain
17	chr6:5827200-5829400	Enhancers	Fetal Brain Male	brain
18	chr6:5827200-5829600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:5827200-5829600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr6:5827400-5827600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:5827400-5828200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:5827400-5828400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:5827400-5828400	Enhancers	Fetal Muscle Trunk	muscle
24	chr6:5827400-5829000	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr6:5827400-5829200	Enhancers	Fetal Brain Female	brain
26	chr6:5827400-5835000	Enhancers	Fetal Thymus	thymus

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