Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13191588	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13218657	0.88[CEU][hapmap]
rs13219662	0.83[EUR][1000 genomes]
rs1407795	0.88[CEU][hapmap]
rs1819201	0.83[EUR][1000 genomes]
rs1830685	0.81[EUR][1000 genomes]
rs35541713	0.85[EUR][1000 genomes]
rs35636471	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4604310	0.88[CEU][hapmap]
rs57758371	0.85[EUR][1000 genomes]
rs6934706	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938255	0.95[ASN][1000 genomes]
rs7763309	0.95[ASN][1000 genomes]
rs9378988	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9392718	0.83[EUR][1000 genomes]
rs9405875	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9405876	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9502354	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9504540	0.86[EUR][1000 genomes]
rs9504542	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9504546	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv970075	chr6:5829270-5841514	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6941973	SERPINB6	cis	cerebellum	SCAN
rs6941973	MGC39372	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5827400-5835000	Enhancers	Fetal Thymus	thymus
2	chr6:5829200-5835000	Enhancers	Primary T cells fromperipheralblood	blood
3	chr6:5832200-5835000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:5832200-5835000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:5832200-5840400	Weak transcription	Right Atrium	heart
6	chr6:5833200-5835000	Enhancers	Primary T cells from cord blood	blood
7	chr6:5834000-5840800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:5834400-5835000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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