Variant report

Variant	rs200520738
Chromosome Location	chr3:119360750-119360751
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829695	chr3:119178890-119367996	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1831824	chr3:119263607-119402474	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv527724	chr3:119353844-119361415	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv520805	chr3:119359045-119361415	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
7	nsv1014394	chr3:119360506-119412275	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119341400-119364600	Weak transcription	Liver	Liver
2	chr3:119349800-119378800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:119352000-119378600	Weak transcription	Thymus	Thymus
4	chr3:119352600-119367000	Weak transcription	Ovary	ovary
5	chr3:119354000-119387600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:119355400-119361000	Weak transcription	Pancreas	Pancrea
7	chr3:119356200-119360800	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:119356200-119389000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:119356800-119360800	Weak transcription	Aorta	Aorta
10	chr3:119356800-119361400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:119356800-119364800	Weak transcription	Stomach Mucosa	stomach
12	chr3:119356800-119390000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:119356800-119391800	Weak transcription	Brain Substantia Nigra	brain
14	chr3:119356800-119391800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:119357200-119361800	Weak transcription	A549	lung
16	chr3:119357200-119383800	Weak transcription	Primary B cells from cord blood	blood
17	chr3:119357800-119360800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr3:119357800-119360800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr3:119357800-119361800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:119357800-119366600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr3:119357800-119367000	Weak transcription	Fetal Intestine Large	intestine
22	chr3:119357800-119386400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr3:119358000-119360800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:119358000-119360800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:119358000-119361000	Weak transcription	Right Ventricle	heart
26	chr3:119358000-119361000	Weak transcription	Spleen	Spleen
27	chr3:119358000-119361800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:119358000-119361800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr3:119358000-119361800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:119358000-119361800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr3:119358000-119361800	Weak transcription	NH-A	brain
32	chr3:119358000-119362000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:119358000-119362000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:119358000-119371200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr3:119358000-119390600	Weak transcription	Brain Anterior Caudate	brain
36	chr3:119358000-119391800	Weak transcription	Colonic Mucosa	Colon
37	chr3:119358200-119361200	Weak transcription	NHLF	lung
38	chr3:119358200-119361400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr3:119358200-119361400	Weak transcription	HSMMtube	muscle
40	chr3:119358200-119361600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:119358200-119362000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr3:119358200-119362800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr3:119358200-119366200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:119358200-119372600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:119358400-119361000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr3:119358400-119361000	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr3:119358400-119361000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr3:119358400-119361000	Weak transcription	Right Atrium	heart
49	chr3:119358400-119361200	Weak transcription	HSMM	muscle
50	chr3:119358400-119361400	Weak transcription	Osteobl	bone

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