Variant report

Variant	rs2005970
Chromosome Location	chr6:5699802-5699803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5693144..5695686-chr6:5698907..5701640,2	K562	blood:

Variant related genes	Relation type
ENSG00000270174	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11752777	0.89[ASN][1000 genomes]
rs13213128	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4959347	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4960125	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4960126	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62408067	0.80[ASN][1000 genomes]
rs7746913	0.83[ASN][1000 genomes]
rs877010	0.86[EUR][1000 genomes]
rs9378980	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9392709	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9392710	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9405280	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9405281	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9405861	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9504488	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3473790	chr6:5692573-5707035	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3473791	chr6:5692573-5707035	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv823407	chr6:5692735-5706712	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5672200-5705800	Weak transcription	Thymus	Thymus
2	chr6:5673800-5701200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:5673800-5709800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:5678000-5709400	Weak transcription	Pancreas	Pancrea
5	chr6:5684800-5706000	Weak transcription	Ovary	ovary
6	chr6:5692800-5701400	Weak transcription	Right Atrium	heart
7	chr6:5695200-5700000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:5695800-5709800	Weak transcription	Fetal Stomach	stomach
9	chr6:5696200-5707600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:5696200-5712400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:5696400-5705400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:5697600-5700800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr6:5698000-5700400	Enhancers	Primary B cells from cord blood	blood
14	chr6:5698200-5700000	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:5698200-5700400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr6:5698800-5700200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr6:5698800-5700400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:5699000-5701200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:5699200-5705600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:5699400-5700000	Enhancers	Fetal Thymus	thymus
21	chr6:5699400-5700800	Weak transcription	Spleen	Spleen
22	chr6:5699400-5708000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:5699400-5713200	Weak transcription	Esophagus	oesophagus
24	chr6:5699600-5704000	Weak transcription	Lung	lung
25	chr6:5699600-5704800	Weak transcription	Dnd41	blood
26	chr6:5699800-5700800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr6:5699800-5702000	Weak transcription	Primary T cells from cord blood	blood
28	chr6:5699800-5715800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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