Variant report

Variant	rs4960126
Chromosome Location	chr6:5683291-5683292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11752777	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13213128	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2005970	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2142738	0.85[ASN][1000 genomes]
rs2326634	0.88[ASN][1000 genomes]
rs4959347	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4960125	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58316826	0.83[ASN][1000 genomes]
rs62385480	0.80[ASN][1000 genomes]
rs62408067	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7746913	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs877010	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9378979	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9378980	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9392709	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9392710	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9405278	0.81[ASN][1000 genomes]
rs9405280	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9405281	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9405859	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9405861	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9504488	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv600887	chr6:5545046-5694713	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5672200-5705800	Weak transcription	Thymus	Thymus
2	chr6:5672400-5685600	Weak transcription	Aorta	Aorta
3	chr6:5673800-5701200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:5673800-5709800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:5674400-5683600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:5678000-5686200	Weak transcription	Gastric	stomach
7	chr6:5678000-5709400	Weak transcription	Pancreas	Pancrea
8	chr6:5678200-5694000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:5678400-5693400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:5678600-5686600	Weak transcription	Right Atrium	heart
11	chr6:5680600-5684600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:5680600-5684600	Weak transcription	Spleen	Spleen
13	chr6:5680600-5695400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:5680800-5684400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:5680800-5684400	Weak transcription	HSMMtube	muscle
16	chr6:5680800-5687600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:5680800-5695000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:5681800-5695000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr6:5682200-5693200	Weak transcription	Primary T cells from cord blood	blood
20	chr6:5682400-5684400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:5682400-5684400	Weak transcription	NHDF-Ad	bronchial
22	chr6:5682400-5684400	Weak transcription	Osteobl	bone
23	chr6:5682400-5695200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:5682400-5695400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:5682800-5683400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:5683200-5684600	Weak transcription	Ovary	ovary

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