Variant report

Variant	rs200610593
Chromosome Location	chr15:41861146-41861147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr15:41860510-41861176	HepG2	liver:	n/a	n/a
2	POLR2A	chr15:41860075-41861242	HepG2	liver:	n/a	n/a
3	MYBL2	chr15:41860481-41861158	HepG2	liver:	n/a	n/a
4	TEAD4	chr15:41860443-41861217	HepG2	liver:	n/a	chr15:41860914-41860923 chr15:41860783-41860792
5	TEAD4	chr15:41860540-41861159	H1-hESC	embryonic stem cell:	n/a	chr15:41860914-41860923 chr15:41860783-41860792
6	SP1	chr15:41860502-41861147	H1-hESC	embryonic stem cell:	n/a	n/a
7	NR3C1	chr15:41860607-41861175	A549	lung:	n/a	n/a
8	TEAD4	chr15:41860512-41861175	H1-hESC	embryonic stem cell:	n/a	chr15:41860914-41860923 chr15:41860783-41860792
9	MYBL2	chr15:41860507-41861355	HepG2	liver:	n/a	n/a
10	POLR2A	chr15:41860605-41861356	H1-hESC	embryonic stem cell:	n/a	n/a
11	BRCA1	chr15:41860805-41861195	HepG2	liver:	n/a	n/a
12	SP1	chr15:41859958-41861183	H1-hESC	embryonic stem cell:	n/a	chr15:41860244-41860254 chr15:41860245-41860254
13	RCOR1	chr15:41860426-41861219	HepG2	liver:	n/a	n/a
14	POLR2A	chr15:41859366-41861492	H1-hESC	embryonic stem cell:	n/a	n/a
15	HDAC2	chr15:41860493-41861161	HepG2	liver:	n/a	chr15:41860993-41861001 chr15:41860812-41860821
16	FOXA1	chr15:41860481-41861156	HepG2	liver:	n/a	n/a
17	POLR2A	chr15:41860539-41861204	HepG2	liver:	n/a	n/a
18	POLR2A	chr15:41859950-41861404	H1-hESC	embryonic stem cell:	n/a	n/a
19	RAD21	chr15:41860562-41861154	H1-hESC	embryonic stem cell:	n/a	chr15:41861015-41861029
20	POLR2A	chr15:41859978-41861269	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
TYRO3	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3436816	chr15:41860414-41861193	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3311137	chr15:41860481-41861176	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3311138	chr15:41860481-41861176	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41852200-41877400	Weak transcription	Aorta	Aorta
2	chr15:41852400-41877200	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:41852600-41877400	Weak transcription	HMEC	breast
4	chr15:41852800-41877400	Weak transcription	NHEK	skin
5	chr15:41853000-41861800	Genic enhancers	Fetal Intestine Large	intestine
6	chr15:41853000-41862000	Genic enhancers	Fetal Intestine Small	intestine
7	chr15:41853200-41861800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr15:41853200-41863200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:41853200-41872600	Weak transcription	Hela-S3	cervix
10	chr15:41853400-41870600	Weak transcription	Stomach Mucosa	stomach
11	chr15:41853600-41862200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr15:41853800-41861400	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:41853800-41864000	Genic enhancers	Brain Cingulate Gyrus	brain
14	chr15:41854000-41871400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:41854200-41877000	Weak transcription	Fetal Brain Male	brain
16	chr15:41855000-41861400	Genic enhancers	Brain Anterior Caudate	brain
17	chr15:41855400-41862000	Weak transcription	NHLF	lung
18	chr15:41855400-41863400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr15:41855400-41864400	Genic enhancers	Brain Hippocampus Middle	brain
20	chr15:41855400-41877000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:41855400-41877200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr15:41856400-41861800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:41856800-41861400	Genic enhancers	Brain Angular Gyrus	brain
24	chr15:41857200-41862200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:41857400-41864000	Genic enhancers	Brain Inferior Temporal Lobe	brain
26	chr15:41857600-41863200	Weak transcription	Fetal Brain Female	brain
27	chr15:41858200-41861400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr15:41858600-41861400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr15:41858600-41861400	Enhancers	Fetal Heart	heart
30	chr15:41858800-41861400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:41858800-41863200	Genic enhancers	Ovary	ovary
32	chr15:41859000-41865400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:41859000-41866200	Weak transcription	NHDF-Ad	bronchial
34	chr15:41859000-41869000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:41859200-41861200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
36	chr15:41859200-41861200	Enhancers	Fetal Kidney	kidney
37	chr15:41859600-41861200	Enhancers	Pancreas	Pancrea
38	chr15:41859600-41861200	Enhancers	Placenta Amnion	Placenta Amnion
39	chr15:41859600-41861400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr15:41859600-41865800	Strong transcription	Stomach Smooth Muscle	stomach
41	chr15:41859600-41868000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:41859800-41861200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr15:41859800-41861200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr15:41859800-41861400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:41859800-41861400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:41859800-41861400	Flanking Active TSS	HepG2	liver
47	chr15:41860000-41861200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:41860000-41861200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr15:41860000-41861200	Enhancers	Gastric	stomach
50	chr15:41860000-41861400	Enhancers	H9 Cell Line	embryonic stem cell

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