Variant report

Variant	rs2007363
Chromosome Location	chr20:23025295-23025296
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23024367..23027840-chr20:23028206..23030938,4	MCF-7	breast:
2	chr20:23021523..23024307-chr20:23024511..23026678,2	MCF-7	breast:
3	chr20:22979981..22982770-chr20:23022858..23025459,2	MCF-7	breast:
4	chr20:22983013..22985671-chr20:23024313..23025918,2	MCF-7	breast:
5	chr20:23025165..23029019-chr20:23031172..23033319,4	K562	blood:
6	chr20:22900035..22903023-chr20:23024141..23027571,3	MCF-7	breast:
7	chr20:22902552..22904666-chr20:23025197..23027691,2	MCF-7	breast:
8	chr20:23013867..23016399-chr20:23024007..23026850,4	MCF-7	breast:
9	chr20:23023433..23026354-chr20:23029463..23031147,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs191987	0.98[ASN][1000 genomes]
rs1962	0.83[CEU][hapmap];0.81[CHD][hapmap];0.94[ASN][1000 genomes]
rs1986208	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2007363	NAPB	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23016000-23026000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr20:23016200-23028200	Weak transcription	Aorta	Aorta
3	chr20:23020800-23026400	Weak transcription	A549	lung
4	chr20:23021000-23026800	Weak transcription	HMEC	breast
5	chr20:23021600-23026400	Weak transcription	Lung	lung
6	chr20:23021600-23027000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr20:23024000-23025800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr20:23024000-23026400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr20:23024200-23025600	Weak transcription	Psoas Muscle	Psoas
10	chr20:23024200-23028200	Weak transcription	Pancreas	Pancrea
11	chr20:23024400-23025400	Weak transcription	Placenta	Placenta
12	chr20:23024400-23026400	Weak transcription	Esophagus	oesophagus
13	chr20:23024600-23025800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr20:23024600-23025800	Enhancers	Spleen	Spleen
15	chr20:23024600-23031400	Weak transcription	K562	blood
16	chr20:23024800-23026600	Weak transcription	Stomach Mucosa	stomach
17	chr20:23024800-23027000	Weak transcription	Gastric	stomach
18	chr20:23025200-23026000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr20:23025200-23026600	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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