Variant report

Variant	rs1986208
Chromosome Location	chr20:23024250-23024251
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23021523..23024307-chr20:23024511..23026678,2	MCF-7	breast:
2	chr20:22979981..22982770-chr20:23022858..23025459,2	MCF-7	breast:
3	chr20:23022684..23024263-chr20:23328966..23331361,2	MCF-7	breast:
4	chr20:22900035..22903023-chr20:23024141..23027571,3	MCF-7	breast:
5	chr20:23013867..23016399-chr20:23024007..23026850,4	MCF-7	breast:
6	chr20:23023433..23026354-chr20:23029463..23031147,2	K562	blood:

Variant related genes	Relation type
ENSG00000132671	Chromatin interaction
ENSG00000178726	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11087411	0.82[ASN][1000 genomes]
rs1883957	0.94[ASN][1000 genomes]
rs2007363	0.95[AFR][1000 genomes]
rs2746622	0.98[ASN][1000 genomes]
rs6082973	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23016000-23026000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr20:23016200-23028200	Weak transcription	Aorta	Aorta
3	chr20:23017600-23024600	Weak transcription	Spleen	Spleen
4	chr20:23020800-23026400	Weak transcription	A549	lung
5	chr20:23021000-23026800	Weak transcription	HMEC	breast
6	chr20:23021400-23025200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr20:23021600-23026400	Weak transcription	Lung	lung
8	chr20:23021600-23027000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr20:23022400-23024800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr20:23022600-23024800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr20:23022600-23025000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr20:23023000-23024800	Enhancers	Stomach Mucosa	stomach
13	chr20:23023200-23024400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr20:23023600-23024400	Enhancers	Esophagus	oesophagus
15	chr20:23023600-23024800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
16	chr20:23023600-23024800	Enhancers	Gastric	stomach
17	chr20:23023800-23024600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr20:23024000-23024600	Enhancers	K562	blood
19	chr20:23024000-23025800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr20:23024000-23026400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr20:23024200-23024400	Enhancers	Placenta	Placenta
22	chr20:23024200-23024400	Enhancers	Right Atrium	heart
23	chr20:23024200-23025600	Weak transcription	Psoas Muscle	Psoas
24	chr20:23024200-23028200	Weak transcription	Pancreas	Pancrea

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