Variant report

Variant	rs11087411
Chromosome Location	chr20:22998303-22998304
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1005920	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1360408	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1986208	0.82[ASN][1000 genomes]
rs2746619	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2746622	0.82[ASN][1000 genomes]
rs6082973	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22991200-23002200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr20:22994400-22999000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr20:22994600-22998800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr20:22995600-22998600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr20:22995600-22999200	Enhancers	Dnd41	blood
6	chr20:22996000-23006200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr20:22996400-22998400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr20:22997200-22998600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr20:22997600-22998800	Enhancers	Fetal Thymus	thymus
10	chr20:22997600-22998800	Enhancers	Thymus	Thymus
11	chr20:22998000-22999600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr20:22998000-22999600	Weak transcription	Brain Substantia Nigra	brain
13	chr20:22998000-23000800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr20:22998200-22998400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr20:22998200-22998400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr20:22998200-22998400	Enhancers	GM12878-XiMat	blood
17	chr20:22998200-22999000	Enhancers	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links