Variant report

Variant	rs1005920
Chromosome Location	chr20:22980470-22980471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11087411	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1360408	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1883957	0.83[MEX][hapmap]
rs2255392	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2746619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6082973	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22978600-22980800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr20:22980000-22981000	Enhancers	HSMM	muscle
3	chr20:22980000-22981200	Flanking Active TSS	A549	lung
4	chr20:22980200-22980600	Enhancers	NHDF-Ad	bronchial
5	chr20:22980200-22981200	Enhancers	HSMMtube	muscle
6	chr20:22980200-22981600	Weak transcription	Lung	lung
7	chr20:22980400-22980800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr20:22980400-22981000	Enhancers	Stomach Mucosa	stomach
9	chr20:22980400-22981600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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