Variant report

Variant	rs1360408
Chromosome Location	chr20:22989346-22989347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1005920	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11087411	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2255392	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2746619	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6082973	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22986800-22990200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr20:22988200-22990200	Enhancers	A549	lung
3	chr20:22988400-22990200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr20:22988400-22993400	Weak transcription	Aorta	Aorta
5	chr20:22988400-22995600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr20:22988800-22989600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr20:22988800-22990400	Enhancers	NHDF-Ad	bronchial
8	chr20:22988800-22992000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr20:22989000-22990200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr20:22989000-22990200	Weak transcription	HMEC	breast
11	chr20:22989000-22990200	Weak transcription	HSMMtube	muscle
12	chr20:22989200-22990200	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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