Variant report

Variant	rs200749
Chromosome Location	chr20:15597972-15597973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1362513	1.00[ASN][1000 genomes]
rs200751	0.91[AFR][1000 genomes]
rs200752	0.91[AFR][1000 genomes]
rs200762	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200772	1.00[ASN][1000 genomes]
rs465528	1.00[ASN][1000 genomes]
rs6034196	1.00[ASN][1000 genomes]
rs6043291	1.00[ASN][1000 genomes]
rs6043294	1.00[ASN][1000 genomes]
rs6043303	1.00[ASN][1000 genomes]
rs6043305	1.00[ASN][1000 genomes]
rs6043308	1.00[ASN][1000 genomes]
rs6110641	1.00[ASN][1000 genomes]
rs73098211	1.00[ASN][1000 genomes]
rs73272955	1.00[ASN][1000 genomes]
rs73272957	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15594600-15606600	Weak transcription	Aorta	Aorta
2	chr20:15596000-15598200	Weak transcription	Fetal Heart	heart
3	chr20:15597400-15600400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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