Variant report

Variant	rs6110641
Chromosome Location	chr20:15493879-15493880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1362513	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs200749	1.00[ASN][1000 genomes]
rs200762	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs200766	1.00[CHD][hapmap]
rs200772	1.00[ASN][1000 genomes]
rs2180525	1.00[CHB][hapmap]
rs465528	1.00[ASN][1000 genomes]
rs6034196	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6043291	1.00[ASN][1000 genomes]
rs6043294	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6043298	1.00[CHB][hapmap]
rs6043303	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6043305	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6043308	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6110617	1.00[CHB][hapmap]
rs73098211	1.00[ASN][1000 genomes]
rs73272955	1.00[ASN][1000 genomes]
rs73272957	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv833927	chr20:15362602-15520185	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6110641	EMX2OS	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15488600-15494000	Weak transcription	Fetal Brain Male	brain
2	chr20:15493600-15494000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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