Variant report

Variant	rs200911
Chromosome Location	chr10:38112928-38112929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11011374	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1208570	0.84[EUR][1000 genomes]
rs1208588	0.84[EUR][1000 genomes]
rs1208595	0.82[EUR][1000 genomes]
rs1208609	0.84[EUR][1000 genomes]
rs1208630	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1779032	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1779079	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs200908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs200932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs200938	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2738220	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38103800-38118000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:38109600-38116000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:38109600-38116200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:38111000-38115800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:38111200-38117200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:38111200-38118400	Weak transcription	HepG2	liver
7	chr10:38112000-38114200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:38112000-38114400	Weak transcription	Primary T cells from cord blood	blood
9	chr10:38112000-38115800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:38112000-38116600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:38112200-38116400	Weak transcription	Fetal Brain Male	brain
12	chr10:38112800-38113400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:38112800-38116000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:38112800-38116000	Weak transcription	Left Ventricle	heart
15	chr10:38112800-38116600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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