Variant report

Variant	rs200932
Chromosome Location	chr10:38128768-38128769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:38125960..38130211-chr10:38145750..38148095,4	MCF-7	breast:
2	chr10:38123782..38128970-chr10:38145175..38149505,4	MCF-7	breast:
3	chr10:38123769..38125348-chr10:38128323..38130587,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236514	Chromatin interaction
ENSG00000198105	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11011374	0.87[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11498210	1.00[YRI][hapmap]
rs1208570	0.84[EUR][1000 genomes]
rs1208588	0.84[EUR][1000 genomes]
rs1208595	0.82[EUR][1000 genomes]
rs1208609	0.84[EUR][1000 genomes]
rs1208630	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1779032	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1779079	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs200908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs200911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs200938	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2738220	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs581482	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38114000-38128800	ZNF genes & repeats	Liver	Liver
2	chr10:38114400-38130000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
3	chr10:38115600-38129000	ZNF genes & repeats	A549	lung
4	chr10:38115600-38138200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:38115800-38132200	ZNF genes & repeats	Fetal Brain Female	brain
6	chr10:38116000-38128800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:38116200-38137800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:38116600-38135800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr10:38117200-38129600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:38117400-38129600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:38117400-38131600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr10:38117600-38128800	ZNF genes & repeats	Fetal Lung	lung
13	chr10:38121200-38131200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:38121800-38129400	Strong transcription	HSMM	muscle
15	chr10:38122200-38134400	Weak transcription	Hela-S3	cervix
16	chr10:38123000-38144400	Weak transcription	NHEK	skin
17	chr10:38123800-38129200	Strong transcription	Primary B cells from peripheral blood	blood
18	chr10:38123800-38129400	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr10:38124000-38144400	Weak transcription	NH-A	brain
20	chr10:38124600-38129600	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr10:38125200-38129800	ZNF genes & repeats	Brain Germinal Matrix	brain
22	chr10:38125200-38144400	Weak transcription	Psoas Muscle	Psoas
23	chr10:38125600-38130000	Strong transcription	Ovary	ovary
24	chr10:38125600-38142800	Weak transcription	NHDF-Ad	bronchial
25	chr10:38125800-38132200	Strong transcription	Dnd41	blood
26	chr10:38125800-38143200	Weak transcription	HepG2	liver
27	chr10:38125800-38144400	Weak transcription	HMEC	breast
28	chr10:38126600-38145600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr10:38126800-38130200	Weak transcription	NHLF	lung
30	chr10:38126800-38134600	Weak transcription	Stomach Mucosa	stomach
31	chr10:38126800-38144800	Weak transcription	Thymus	Thymus
32	chr10:38127000-38128800	Strong transcription	Primary B cells from cord blood	blood
33	chr10:38127000-38129800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr10:38127000-38131200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:38127000-38131200	Weak transcription	Fetal Stomach	stomach
36	chr10:38127000-38131400	Weak transcription	Aorta	Aorta
37	chr10:38127000-38131600	Weak transcription	Right Ventricle	heart
38	chr10:38127000-38131600	Weak transcription	Small Intestine	intestine
39	chr10:38127000-38132000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:38127000-38134000	Weak transcription	Spleen	Spleen
41	chr10:38127000-38134800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:38127000-38134800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr10:38127000-38135000	Weak transcription	Lung	lung
44	chr10:38127000-38135400	Weak transcription	Esophagus	oesophagus
45	chr10:38127000-38142800	Weak transcription	Colon Smooth Muscle	Colon
46	chr10:38127000-38143600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:38127000-38143600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:38127000-38143800	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:38127000-38144200	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr10:38127000-38144400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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