Variant report

Variant	rs581482
Chromosome Location	chr10:38339321-38339322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1208570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208588	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208595	0.98[EUR][1000 genomes]
rs1208609	1.00[EUR][1000 genomes]
rs1208630	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1779032	1.00[EUR][1000 genomes]
rs1779079	1.00[EUR][1000 genomes]
rs200932	0.84[EUR][1000 genomes]
rs200938	0.92[EUR][1000 genomes]
rs2474577	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2504122	0.92[EUR][1000 genomes]
rs2504125	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2504146	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2738220	1.00[EUR][1000 genomes]
rs41276140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv534122	chr10:38240258-38356008	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38300600-38339400	Weak transcription	Psoas Muscle	Psoas
2	chr10:38301800-38344400	Weak transcription	Hela-S3	cervix
3	chr10:38307600-38346600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:38307800-38343600	Weak transcription	Small Intestine	intestine
5	chr10:38307800-38344000	Weak transcription	Stomach Mucosa	stomach
6	chr10:38308000-38342200	Weak transcription	Brain Angular Gyrus	brain
7	chr10:38309000-38342200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:38309800-38344200	Weak transcription	NH-A	brain
9	chr10:38314600-38342800	Weak transcription	Brain Substantia Nigra	brain
10	chr10:38315000-38342800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:38316000-38339800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:38316000-38342600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:38316600-38343600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:38322000-38339400	Weak transcription	Spleen	Spleen
15	chr10:38322000-38342000	Weak transcription	Gastric	stomach
16	chr10:38322000-38342600	Weak transcription	Right Ventricle	heart
17	chr10:38322400-38342800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:38323800-38342000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:38323800-38343000	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:38324000-38342000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:38324600-38342000	Weak transcription	Fetal Brain Male	brain
22	chr10:38324600-38343800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr10:38325200-38339600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:38325200-38342000	Weak transcription	HMEC	breast
25	chr10:38325200-38344000	Weak transcription	Osteobl	bone
26	chr10:38325400-38342200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:38325600-38342000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:38325800-38343200	Weak transcription	Brain Anterior Caudate	brain
29	chr10:38326000-38342800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:38326400-38342000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:38326600-38349200	Weak transcription	HepG2	liver
32	chr10:38327800-38344000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:38331600-38342600	Weak transcription	Colon Smooth Muscle	Colon
34	chr10:38332000-38339400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:38333000-38342000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr10:38333200-38341600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:38334000-38343000	Weak transcription	Brain Germinal Matrix	brain
38	chr10:38334000-38350600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
39	chr10:38334200-38342200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:38334400-38339400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:38334800-38342200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr10:38334800-38342600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:38335000-38342200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:38335200-38339400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:38335200-38342600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr10:38335200-38342800	Weak transcription	Fetal Kidney	kidney
47	chr10:38335400-38339400	Weak transcription	Fetal Thymus	thymus
48	chr10:38335400-38342000	Weak transcription	Fetal Muscle Leg	muscle
49	chr10:38335400-38342200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:38335600-38339400	Weak transcription	Adipose Nuclei	Adipose

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