Variant report

Variant	rs200975399
Chromosome Location	chr15:50086279-50086280
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:50086196-50086282	A549	lung:	n/a	n/a
2	POLR2A	chr15:50086116-50086327	GM12878	blood:	n/a	n/a
3	POLR2A	chr15:50086190-50086309	A549	lung:	n/a	n/a
4	POLR2A	chr15:50086144-50086349	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr15:50086081-50086461	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chr15:50086174-50086368	A549	lung:	n/a	n/a
7	GABPA	chr15:50086181-50086289	HepG2	liver:	n/a	n/a
8	POLR2A	chr15:50086145-50086310	H1-hESC	embryonic stem cell:	n/a	n/a
9	TAF1	chr15:50086116-50086318	H1-hESC	embryonic stem cell:	n/a	n/a
10	GABPA	chr15:50086151-50086344	Hela-S3	cervix:	n/a	n/a
11	TAF1	chr15:50086169-50086308	Hela-S3	cervix:	n/a	n/a
12	YY1	chr15:50086168-50086388	A549	lung:	n/a	n/a
13	GABPA	chr15:50086179-50086292	HepG2	liver:	n/a	n/a
14	POLR2A	chr15:50086104-50086302	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr15:50086117-50086346	GM12878	blood:	n/a	n/a
16	POLR2A	chr15:50086186-50086340	GM12878	blood:	n/a	n/a
17	TAF1	chr15:50086064-50086339	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr15:50086092-50086305	H1-hESC	embryonic stem cell:	n/a	n/a
19	TAF1	chr15:50086070-50086333	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr15:50086171-50086323	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr15:50086180-50086286	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000259388	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1528	chr15:50067958-50112958	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1047047	chr15:50070224-50125096	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1042311	chr15:50083175-50125096	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2761888	chr15:50083187-50125108	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv977869	chr15:50084876-50090745	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv542381	chr15:50086150-50115876	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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