Variant report

Variant	rs2010407
Chromosome Location	chr17:33675233-33675234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11869333	0.82[AMR][1000 genomes]
rs11871908	0.82[AMR][1000 genomes]
rs12450322	0.81[AMR][1000 genomes]
rs1548182	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4796071	0.82[AMR][1000 genomes]
rs4796073	0.82[AMR][1000 genomes]
rs6505460	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7220345	0.82[ASN][1000 genomes]
rs8068794	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8070528	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9898340	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9905691	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv457724	chr17:33609247-33691409	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv574742	chr17:33609247-33691409	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv457725	chr17:33664044-33774159	Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv574743	chr17:33664044-33774159	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv515566	chr17:33664818-33768199	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv1066569	chr17:33671156-33758566	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1062610	chr17:33671466-33758566	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33673000-33679400	Weak transcription	Lung	lung
2	chr17:33673800-33677600	Weak transcription	NHLF	lung
3	chr17:33673800-33689800	Weak transcription	Gastric	stomach
4	chr17:33673800-33699800	Weak transcription	Ovary	ovary
5	chr17:33674000-33675400	Enhancers	Primary B cells from cord blood	blood
6	chr17:33674000-33675600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr17:33674000-33675800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr17:33674000-33676000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr17:33674000-33676000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr17:33674000-33677600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:33674000-33678000	Weak transcription	Aorta	Aorta
12	chr17:33674000-33678000	Weak transcription	Esophagus	oesophagus
13	chr17:33674000-33678200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr17:33674000-33678600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr17:33674000-33679400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr17:33674000-33679400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr17:33674000-33681600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr17:33674000-33682600	Weak transcription	NHDF-Ad	bronchial
19	chr17:33674000-33686400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr17:33674000-33695600	Weak transcription	Colonic Mucosa	Colon
21	chr17:33674000-33695600	Weak transcription	Placenta	Placenta
22	chr17:33674000-33698600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr17:33674200-33675400	Enhancers	Adipose Nuclei	Adipose
24	chr17:33674200-33675800	Weak transcription	Dnd41	blood
25	chr17:33674200-33676000	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr17:33674200-33677600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr17:33674200-33677800	Weak transcription	HUVEC	blood vessel
28	chr17:33674200-33678200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr17:33674200-33678800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr17:33674200-33679200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr17:33674200-33679200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr17:33674200-33679400	Weak transcription	Primary T cells from cord blood	blood
33	chr17:33674200-33679600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr17:33674200-33686000	Weak transcription	Brain Hippocampus Middle	brain
35	chr17:33674200-33699800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr17:33674400-33676000	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr17:33674400-33676400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr17:33674400-33677800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr17:33674400-33677800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr17:33674400-33678000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr17:33674400-33678000	Weak transcription	Osteobl	bone
42	chr17:33674400-33678600	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr17:33674400-33679000	Weak transcription	Spleen	Spleen
44	chr17:33674400-33679200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr17:33674400-33679400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr17:33674400-33693600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr17:33674600-33675600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr17:33674600-33694600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr17:33674800-33677600	Weak transcription	Fetal Thymus	thymus
50	chr17:33674800-33683600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links