Variant report

Variant	rs2010535
Chromosome Location	chr11:9718890-9718891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10770056	0.82[EUR][1000 genomes]
rs10770057	0.91[EUR][1000 genomes]
rs10840290	0.83[EUR][1000 genomes]
rs10840291	0.83[EUR][1000 genomes]
rs10840292	0.83[EUR][1000 genomes]
rs11042476	0.87[EUR][1000 genomes]
rs11042481	0.84[EUR][1000 genomes]
rs11042482	0.84[EUR][1000 genomes]
rs11042483	0.84[EUR][1000 genomes]
rs12271923	0.82[EUR][1000 genomes]
rs12272107	0.83[EUR][1000 genomes]
rs12272277	0.83[EUR][1000 genomes]
rs12280169	0.80[EUR][1000 genomes]
rs12280320	0.83[EUR][1000 genomes]
rs12283521	0.86[EUR][1000 genomes]
rs12291809	0.92[EUR][1000 genomes]
rs12801958	0.82[EUR][1000 genomes]
rs1390679	0.84[EUR][1000 genomes]
rs1390681	0.84[EUR][1000 genomes]
rs1390682	0.84[EUR][1000 genomes]
rs1390683	0.84[EUR][1000 genomes]
rs1390684	0.84[EUR][1000 genomes]
rs1435462	0.84[EUR][1000 genomes]
rs1435463	0.86[ASN][1000 genomes]
rs1695613	0.84[EUR][1000 genomes]
rs1874476	0.84[EUR][1000 genomes]
rs1960386	0.84[EUR][1000 genomes]
rs1960387	0.83[EUR][1000 genomes]
rs2117698	0.82[EUR][1000 genomes]
rs2132565	0.84[EUR][1000 genomes]
rs2132566	0.84[EUR][1000 genomes]
rs2132567	0.84[EUR][1000 genomes]
rs2164311	0.83[EUR][1000 genomes]
rs2252354	0.84[EUR][1000 genomes]
rs2336805	0.84[EUR][1000 genomes]
rs2453831	0.80[EUR][1000 genomes]
rs2453832	0.80[EUR][1000 genomes]
rs2454611	0.80[EUR][1000 genomes]
rs2454612	0.80[EUR][1000 genomes]
rs2572934	0.84[EUR][1000 genomes]
rs2572935	0.83[EUR][1000 genomes]
rs2572942	0.80[EUR][1000 genomes]
rs2572943	0.84[EUR][1000 genomes]
rs2572944	0.84[EUR][1000 genomes]
rs2572945	0.80[EUR][1000 genomes]
rs2645007	0.80[EUR][1000 genomes]
rs2645010	0.80[EUR][1000 genomes]
rs2645011	0.80[EUR][1000 genomes]
rs2645012	0.83[EUR][1000 genomes]
rs2645025	0.84[EUR][1000 genomes]
rs2649046	0.84[EUR][1000 genomes]
rs2649048	0.84[EUR][1000 genomes]
rs34043654	0.88[EUR][1000 genomes]
rs34063054	0.83[EUR][1000 genomes]
rs360047	0.84[EUR][1000 genomes]
rs368731	0.84[EUR][1000 genomes]
rs3763865	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs385846	0.80[EUR][1000 genomes]
rs389534	0.84[EUR][1000 genomes]
rs392815	0.84[EUR][1000 genomes]
rs397250	0.84[EUR][1000 genomes]
rs397602	0.84[EUR][1000 genomes]
rs397686	0.80[EUR][1000 genomes]
rs399898	0.84[EUR][1000 genomes]
rs408569	0.84[EUR][1000 genomes]
rs414109	0.84[EUR][1000 genomes]
rs416804	0.84[EUR][1000 genomes]
rs418931	0.84[EUR][1000 genomes]
rs419412	0.84[EUR][1000 genomes]
rs422061	0.84[EUR][1000 genomes]
rs424455	0.87[EUR][1000 genomes]
rs428747	0.84[EUR][1000 genomes]
rs429546	0.84[EUR][1000 genomes]
rs431908	0.83[EUR][1000 genomes]
rs435079	0.88[EUR][1000 genomes]
rs440523	0.84[EUR][1000 genomes]
rs441965	0.82[EUR][1000 genomes]
rs442722	0.84[EUR][1000 genomes]
rs443576	0.83[EUR][1000 genomes]
rs446146	0.84[EUR][1000 genomes]
rs447601	0.84[EUR][1000 genomes]
rs4478983	0.84[EUR][1000 genomes]
rs449005	0.84[EUR][1000 genomes]
rs452169	0.80[EUR][1000 genomes]
rs476163	0.88[EUR][1000 genomes]
rs4910491	0.84[EUR][1000 genomes]
rs4910496	0.81[EUR][1000 genomes]
rs4993191	0.87[EUR][1000 genomes]
rs534901	0.84[EUR][1000 genomes]
rs581004	0.87[EUR][1000 genomes]
rs60466677	0.84[EUR][1000 genomes]
rs7117197	0.80[EUR][1000 genomes]
rs7935643	0.84[EUR][1000 genomes]
rs7938818	0.84[EUR][1000 genomes]
rs7949818	0.84[EUR][1000 genomes]
rs892851	0.87[EUR][1000 genomes]
rs892852	0.87[EUR][1000 genomes]
rs892853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs892855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs892856	0.87[EUR][1000 genomes]
rs920080	0.84[EUR][1000 genomes]
rs920082	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1045550	chr11:9718324-9790088	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9704200-9723600	Weak transcription	HepG2	liver
2	chr11:9710200-9758400	Weak transcription	Psoas Muscle	Psoas
3	chr11:9710400-9732800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:9710600-9722000	Weak transcription	Fetal Brain Female	brain
5	chr11:9711200-9732800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:9711400-9754400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:9711600-9723600	Weak transcription	Fetal Lung	lung
8	chr11:9711600-9724000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:9711600-9724400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:9711600-9725800	Weak transcription	HSMMtube	muscle
11	chr11:9711600-9729600	Weak transcription	Fetal Heart	heart
12	chr11:9711600-9730200	Weak transcription	Right Ventricle	heart
13	chr11:9711600-9731400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:9711600-9732800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:9711600-9733200	Weak transcription	Aorta	Aorta
16	chr11:9711600-9736600	Weak transcription	Gastric	stomach
17	chr11:9711800-9722000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:9713400-9724000	Weak transcription	Small Intestine	intestine
19	chr11:9713600-9723800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:9713600-9730000	Weak transcription	NH-A	brain
21	chr11:9715000-9721600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:9715000-9721800	Weak transcription	Fetal Kidney	kidney
23	chr11:9715200-9720000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:9715400-9720000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr11:9715400-9730200	Weak transcription	Pancreas	Pancrea
26	chr11:9715600-9719400	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr11:9715600-9719600	Genic enhancers	Primary B cells from cord blood	blood
28	chr11:9715800-9719600	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:9715800-9720200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:9715800-9721200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:9715800-9721800	Weak transcription	Brain Substantia Nigra	brain
32	chr11:9715800-9723800	Weak transcription	Fetal Thymus	thymus
33	chr11:9715800-9731200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr11:9715800-9732800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:9716000-9721800	Weak transcription	Brain Angular Gyrus	brain
36	chr11:9716000-9721800	Weak transcription	Stomach Mucosa	stomach
37	chr11:9716000-9723600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:9716000-9730200	Weak transcription	Esophagus	oesophagus
39	chr11:9716000-9736600	Weak transcription	NHEK	skin
40	chr11:9716000-9738000	Weak transcription	HMEC	breast
41	chr11:9716200-9719600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:9716200-9720200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:9716200-9724000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr11:9716800-9719600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:9717200-9719200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:9717200-9721600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr11:9717400-9719400	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr11:9717400-9721800	Weak transcription	Primary T cells from cord blood	blood
49	chr11:9717400-9721800	Weak transcription	Brain Anterior Caudate	brain
50	chr11:9717600-9719000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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