Variant report

Variant	rs892856
Chromosome Location	chr11:9718681-9718682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10219178	0.81[ASN][1000 genomes]
rs10770056	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12281578	0.82[ASN][1000 genomes]
rs12291809	0.81[EUR][1000 genomes]
rs12421878	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs12786236	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs12789209	0.90[EUR][1000 genomes]
rs12801958	0.94[EUR][1000 genomes]
rs12803440	0.88[EUR][1000 genomes]
rs12805683	0.84[EUR][1000 genomes]
rs1695613	0.86[CEU][hapmap]
rs1836639	0.83[ASN][1000 genomes]
rs2010535	0.87[EUR][1000 genomes]
rs2117698	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2117699	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2164311	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2453831	0.86[CEU][hapmap]
rs2649048	0.91[CEU][hapmap]
rs34063054	0.95[EUR][1000 genomes]
rs360047	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs360049	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs360051	0.82[ASN][1000 genomes]
rs360054	0.80[ASN][1000 genomes]
rs369737	0.83[CEU][hapmap]
rs389534	0.86[CEU][hapmap]
rs397250	0.91[CEU][hapmap]
rs397602	0.91[CEU][hapmap]
rs397686	0.86[CEU][hapmap]
rs408569	0.91[CEU][hapmap]
rs422061	0.91[CEU][hapmap]
rs431908	0.91[CEU][hapmap]
rs4548612	0.86[ASN][1000 genomes]
rs4910060	0.83[EUR][1000 genomes]
rs4910489	0.86[ASN][1000 genomes]
rs4910492	0.83[EUR][1000 genomes]
rs4910493	0.87[EUR][1000 genomes]
rs4910497	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs4993191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67867011	0.87[EUR][1000 genomes]
rs7116226	0.82[EUR][1000 genomes]
rs7925177	0.82[ASN][1000 genomes]
rs7932792	0.83[ASN][1000 genomes]
rs892851	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs892852	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs892853	0.87[EUR][1000 genomes]
rs892855	0.87[EUR][1000 genomes]
rs920082	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1045550	chr11:9718324-9790088	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9704200-9723600	Weak transcription	HepG2	liver
2	chr11:9710200-9758400	Weak transcription	Psoas Muscle	Psoas
3	chr11:9710400-9732800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:9710600-9722000	Weak transcription	Fetal Brain Female	brain
5	chr11:9711200-9732800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:9711400-9718800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:9711400-9754400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:9711600-9723600	Weak transcription	Fetal Lung	lung
9	chr11:9711600-9724000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:9711600-9724400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:9711600-9725800	Weak transcription	HSMMtube	muscle
12	chr11:9711600-9729600	Weak transcription	Fetal Heart	heart
13	chr11:9711600-9730200	Weak transcription	Right Ventricle	heart
14	chr11:9711600-9731400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:9711600-9732800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:9711600-9733200	Weak transcription	Aorta	Aorta
17	chr11:9711600-9736600	Weak transcription	Gastric	stomach
18	chr11:9711800-9722000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr11:9713400-9724000	Weak transcription	Small Intestine	intestine
20	chr11:9713600-9723800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:9713600-9730000	Weak transcription	NH-A	brain
22	chr11:9715000-9718800	Strong transcription	HUVEC	blood vessel
23	chr11:9715000-9718800	Strong transcription	NHDF-Ad	bronchial
24	chr11:9715000-9721600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:9715000-9721800	Weak transcription	Fetal Kidney	kidney
26	chr11:9715200-9720000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:9715400-9720000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:9715400-9730200	Weak transcription	Pancreas	Pancrea
29	chr11:9715600-9719400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr11:9715600-9719600	Genic enhancers	Primary B cells from cord blood	blood
31	chr11:9715800-9719600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:9715800-9720200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:9715800-9721200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr11:9715800-9721800	Weak transcription	Brain Substantia Nigra	brain
35	chr11:9715800-9723800	Weak transcription	Fetal Thymus	thymus
36	chr11:9715800-9731200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr11:9715800-9732800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr11:9716000-9721800	Weak transcription	Brain Angular Gyrus	brain
39	chr11:9716000-9721800	Weak transcription	Stomach Mucosa	stomach
40	chr11:9716000-9723600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr11:9716000-9730200	Weak transcription	Esophagus	oesophagus
42	chr11:9716000-9736600	Weak transcription	NHEK	skin
43	chr11:9716000-9738000	Weak transcription	HMEC	breast
44	chr11:9716200-9719600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:9716200-9720200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:9716200-9724000	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr11:9716800-9719600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:9717200-9719200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:9717200-9721600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr11:9717400-9718800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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