Variant report

Variant	rs1836639
Chromosome Location	chr11:9704256-9704257
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10219178	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10770056	0.86[ASN][1000 genomes]
rs12281578	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2117698	0.85[ASN][1000 genomes]
rs2117699	0.85[ASN][1000 genomes]
rs2164311	0.82[ASN][1000 genomes]
rs360047	0.87[ASN][1000 genomes]
rs360049	0.88[ASN][1000 genomes]
rs360051	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs360054	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4548612	0.94[ASN][1000 genomes]
rs4910489	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4993191	0.85[ASN][1000 genomes]
rs56096143	1.00[EUR][1000 genomes]
rs67008130	0.81[ASN][1000 genomes]
rs7925177	0.91[ASN][1000 genomes]
rs7932792	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs892851	0.85[ASN][1000 genomes]
rs892852	0.85[ASN][1000 genomes]
rs892856	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9686600-9704600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:9686600-9709600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr11:9686600-9711200	Weak transcription	Esophagus	oesophagus
4	chr11:9686800-9710800	Weak transcription	Aorta	Aorta
5	chr11:9686800-9716400	Weak transcription	Ovary	ovary
6	chr11:9687200-9705000	Weak transcription	HSMM	muscle
7	chr11:9687200-9709400	Weak transcription	HSMMtube	muscle
8	chr11:9687200-9710200	Weak transcription	Hela-S3	cervix
9	chr11:9687400-9709200	Weak transcription	HMEC	breast
10	chr11:9687400-9710800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:9687800-9708000	Weak transcription	Pancreas	Pancrea
12	chr11:9687800-9709000	Weak transcription	Adipose Nuclei	Adipose
13	chr11:9688200-9710000	Weak transcription	A549	lung
14	chr11:9689400-9706800	Weak transcription	Placenta	Placenta
15	chr11:9693200-9710000	Weak transcription	Fetal Thymus	thymus
16	chr11:9694800-9709200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:9695000-9709200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:9695000-9709400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:9695000-9709400	Weak transcription	NHLF	lung
20	chr11:9695200-9705000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:9695200-9709800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:9695400-9709200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:9696200-9709600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:9697000-9709800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:9697400-9705400	Weak transcription	NHDF-Ad	bronchial
26	chr11:9697400-9708000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:9697600-9709600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:9697800-9709800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:9698000-9705000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:9698000-9709200	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:9698800-9708400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:9699400-9709200	Weak transcription	NHEK	skin
33	chr11:9699800-9709200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr11:9700000-9709600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:9700400-9709200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:9700600-9710000	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr11:9701000-9704600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr11:9701000-9709400	Weak transcription	Psoas Muscle	Psoas
39	chr11:9701000-9712800	Weak transcription	Small Intestine	intestine
40	chr11:9702200-9705800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:9702400-9706000	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr11:9702600-9705400	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr11:9702600-9705400	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr11:9702600-9709400	Weak transcription	Fetal Stomach	stomach
45	chr11:9702800-9704800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:9702800-9705000	Weak transcription	Left Ventricle	heart
47	chr11:9702800-9705800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:9702800-9709200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:9702800-9709800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:9702800-9709800	Weak transcription	Duodenum Mucosa	Duodenum

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