Variant report

Variant	rs4910489
Chromosome Location	chr11:9711156-9711157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9708443..9711288-chr11:9711524..9713112,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10219178	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10770056	0.87[ASN][1000 genomes]
rs12281578	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1496475	1.00[CEU][hapmap]
rs1532422	1.00[CEU][hapmap]
rs16907071	1.00[CEU][hapmap]
rs1836639	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2117698	0.88[ASN][1000 genomes]
rs2117699	0.88[ASN][1000 genomes]
rs2164311	0.85[ASN][1000 genomes]
rs2878800	1.00[CEU][hapmap]
rs360047	0.85[ASN][1000 genomes]
rs360049	0.87[ASN][1000 genomes]
rs360051	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs360054	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3751001	1.00[CEU][hapmap]
rs4548612	0.97[ASN][1000 genomes]
rs4635070	0.82[ASN][1000 genomes]
rs4993191	0.88[ASN][1000 genomes]
rs56096143	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67008130	0.84[ASN][1000 genomes]
rs7113055	1.00[CEU][hapmap]
rs7925177	0.95[ASN][1000 genomes]
rs7932792	0.97[ASN][1000 genomes]
rs892851	0.88[ASN][1000 genomes]
rs892852	0.88[ASN][1000 genomes]
rs892856	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9686600-9711200	Weak transcription	Esophagus	oesophagus
2	chr11:9686800-9716400	Weak transcription	Ovary	ovary
3	chr11:9701000-9712800	Weak transcription	Small Intestine	intestine
4	chr11:9702800-9711200	Weak transcription	Lung	lung
5	chr11:9703800-9714400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr11:9704200-9723600	Weak transcription	HepG2	liver
7	chr11:9705000-9711200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:9705600-9711200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:9708200-9711200	Weak transcription	Pancreas	Pancrea
10	chr11:9708400-9711800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:9708400-9712000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr11:9708800-9711600	Enhancers	Fetal Heart	heart
13	chr11:9709000-9712200	Enhancers	Adipose Nuclei	Adipose
14	chr11:9709200-9711600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:9709200-9711600	Enhancers	Rectal Smooth Muscle	rectum
16	chr11:9709200-9711800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:9709200-9711800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr11:9709200-9711800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr11:9709200-9711800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:9709400-9711200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr11:9709400-9711600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:9709400-9711600	Enhancers	Fetal Lung	lung
23	chr11:9709400-9711600	Enhancers	Fetal Stomach	stomach
24	chr11:9709400-9711600	Enhancers	HSMMtube	muscle
25	chr11:9709400-9711600	Enhancers	NHLF	lung
26	chr11:9709400-9711800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:9709600-9711400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr11:9709600-9711600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr11:9709600-9711600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr11:9709600-9712000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:9709600-9715600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:9709800-9711200	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr11:9709800-9711400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:9709800-9711400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr11:9709800-9711400	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr11:9709800-9711400	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr11:9709800-9711400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:9709800-9711400	Enhancers	Primary T cells from cord blood	blood
39	chr11:9709800-9711600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:9709800-9711600	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr11:9709800-9711600	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr11:9709800-9711600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:9709800-9711600	Enhancers	Brain Germinal Matrix	brain
44	chr11:9709800-9711600	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr11:9709800-9711800	Enhancers	HSMM	muscle
46	chr11:9709800-9712000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:9709800-9712200	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr11:9709800-9712200	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr11:9709800-9713000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:9709800-9713000	Enhancers	Left Ventricle	heart

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