Variant report

Variant	rs16907071
Chromosome Location	chr11:9823804-9823805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9822472..9825243-chr11:9829711..9832940,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133812	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1045634	0.94[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1056593	0.83[CHB][hapmap]
rs10770061	0.94[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10840300	0.89[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10840301	0.84[ASN][1000 genomes]
rs10840302	0.88[ASN][1000 genomes]
rs10840304	0.94[ASN][1000 genomes]
rs10840307	0.96[ASN][1000 genomes]
rs11042494	0.89[ASN][1000 genomes]
rs11042495	0.88[ASN][1000 genomes]
rs11042498	0.89[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11042562	1.00[CEU][hapmap]
rs12786198	0.93[ASN][1000 genomes]
rs1496475	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs1532422	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs16907215	1.00[ASW][hapmap]
rs16907248	1.00[ASW][hapmap]
rs2878800	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs360148	0.88[ASN][1000 genomes]
rs360149	0.88[ASN][1000 genomes]
rs3751001	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3763862	0.94[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs3829252	0.94[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs4910500	0.94[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4910501	0.89[ASN][1000 genomes]
rs4910502	0.89[ASN][1000 genomes]
rs4910503	0.89[ASN][1000 genomes]
rs55934784	0.87[ASN][1000 genomes]
rs7102804	0.92[ASN][1000 genomes]
rs7105203	0.87[ASN][1000 genomes]
rs7113055	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs7113459	0.92[ASN][1000 genomes]
rs7114514	0.82[CHB][hapmap]
rs7120754	0.88[ASN][1000 genomes]
rs7124706	0.88[ASN][1000 genomes]
rs7925875	0.88[ASN][1000 genomes]
rs7936721	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9795121	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9803200-9828600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:9803200-9828600	Weak transcription	Gastric	stomach
3	chr11:9803200-9828800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr11:9806800-9828600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:9808400-9828800	Weak transcription	Fetal Kidney	kidney
6	chr11:9809600-9828600	Weak transcription	Esophagus	oesophagus
7	chr11:9809600-9832600	Weak transcription	Colonic Mucosa	Colon
8	chr11:9809800-9828000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:9809800-9828600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:9810000-9829200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr11:9810200-9828400	Weak transcription	Primary T cells from cord blood	blood
12	chr11:9810200-9829200	Weak transcription	Fetal Brain Male	brain
13	chr11:9810800-9828600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:9810800-9829000	Weak transcription	Right Ventricle	heart
15	chr11:9811000-9828600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:9811200-9824000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:9811600-9824000	Weak transcription	Brain Substantia Nigra	brain
18	chr11:9811600-9828000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:9811600-9828600	Weak transcription	Dnd41	blood
20	chr11:9811600-9828600	Weak transcription	HUVEC	blood vessel
21	chr11:9811600-9828800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:9811600-9828800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:9811800-9827200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:9811800-9827800	Weak transcription	Fetal Thymus	thymus
25	chr11:9811800-9827800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:9811800-9828400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr11:9811800-9828600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:9811800-9828800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:9811800-9828800	Weak transcription	Brain Germinal Matrix	brain
30	chr11:9811800-9828800	Weak transcription	Lung	lung
31	chr11:9811800-9828800	Weak transcription	Thymus	Thymus
32	chr11:9812000-9824200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:9812000-9825200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:9812000-9828400	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:9812200-9825400	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr11:9812200-9862200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr11:9812400-9828400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:9812800-9824000	Weak transcription	HepG2	liver
39	chr11:9815800-9826000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:9817600-9827200	Weak transcription	Ovary	ovary
41	chr11:9818600-9881400	Weak transcription	Spleen	Spleen
42	chr11:9819200-9825000	Weak transcription	Liver	Liver
43	chr11:9819200-9825400	Weak transcription	Left Ventricle	heart
44	chr11:9819200-9828000	Weak transcription	Primary B cells from cord blood	blood
45	chr11:9819600-9827800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:9820000-9825000	Weak transcription	Aorta	Aorta
47	chr11:9820000-9828600	Weak transcription	Pancreas	Pancrea
48	chr11:9820200-9827000	Weak transcription	Fetal Muscle Trunk	muscle
49	chr11:9820200-9828600	Weak transcription	Fetal Brain Female	brain
50	chr11:9820400-9825400	Weak transcription	Fetal Intestine Large	intestine

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