Variant report

Variant	rs7114514
Chromosome Location	chr11:9755347-9755348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9634288..9636670-chr11:9753675..9757139,3	MCF-7	breast:
2	chr11:9684481..9687167-chr11:9753341..9755403,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133789	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1045634	0.84[JPT][hapmap]
rs1056593	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs1056674	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10770061	0.84[JPT][hapmap]
rs11042498	0.84[JPT][hapmap]
rs11821544	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11821692	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11825952	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11828354	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1496475	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1532422	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16906967	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16907071	0.82[CHB][hapmap]
rs1845884	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28607967	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2878800	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3197265	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34696762	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3763862	0.84[JPT][hapmap]
rs3817010	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3829252	0.84[JPT][hapmap]
rs4910500	0.84[JPT][hapmap]
rs55959510	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56029305	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56096143	0.82[ASN][1000 genomes]
rs56294870	0.81[ASN][1000 genomes]
rs56340721	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57070018	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57590863	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57650149	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57843161	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57864531	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58073079	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58217715	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58765157	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59070186	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60195226	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60544361	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60548107	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60601382	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60929104	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61059316	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61284089	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61469272	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6483649	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6483650	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6483651	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6483654	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6483655	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6483657	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6483658	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7113055	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7928407	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7935267	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7936721	0.85[JPT][hapmap]
rs7939896	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7940708	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7940826	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7946920	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7949343	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7950075	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs868860	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs868861	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs868862	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1045550	chr11:9718324-9790088	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9710200-9758400	Weak transcription	Psoas Muscle	Psoas
2	chr11:9729600-9755400	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr11:9730600-9758200	Weak transcription	Esophagus	oesophagus
4	chr11:9733600-9757000	Weak transcription	Fetal Brain Female	brain
5	chr11:9733600-9761600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:9733800-9759800	Weak transcription	Fetal Heart	heart
7	chr11:9740000-9758000	Weak transcription	Aorta	Aorta
8	chr11:9740000-9762000	Weak transcription	Brain Angular Gyrus	brain
9	chr11:9742200-9756800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:9742200-9758400	Weak transcription	Brain Substantia Nigra	brain
11	chr11:9742200-9759800	Weak transcription	Fetal Kidney	kidney
12	chr11:9742200-9779400	Weak transcription	Fetal Brain Male	brain
13	chr11:9744400-9756800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:9744600-9761400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:9744800-9756000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:9744800-9758000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:9745000-9775600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:9745600-9758600	Strong transcription	NHDF-Ad	bronchial
19	chr11:9747400-9757000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr11:9749000-9757000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:9749000-9761800	Weak transcription	Small Intestine	intestine
22	chr11:9749000-9764400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:9749000-9764400	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr11:9749200-9758000	Weak transcription	Stomach Mucosa	stomach
25	chr11:9749400-9755800	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:9749400-9757800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:9749400-9757800	Strong transcription	HSMM	muscle
28	chr11:9749400-9758000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:9749400-9758800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:9749400-9764400	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:9749600-9756200	Strong transcription	NHLF	lung
32	chr11:9749600-9764400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:9750000-9756800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr11:9750000-9757200	Strong transcription	HUVEC	blood vessel
35	chr11:9750200-9758400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:9751000-9764400	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr11:9751400-9757000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:9751400-9758400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:9751800-9755800	Weak transcription	Fetal Intestine Small	intestine
40	chr11:9753000-9756600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr11:9753000-9757000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:9753200-9757000	Strong transcription	Primary hematopoietic stem cells	blood
43	chr11:9753400-9756000	Strong transcription	Placenta	Placenta
44	chr11:9753400-9757800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:9753800-9755400	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr11:9753800-9755400	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:9753800-9756000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:9753800-9756200	Strong transcription	Fetal Intestine Large	intestine
49	chr11:9753800-9756400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr11:9753800-9764400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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