Variant report

Variant	rs7949343
Chromosome Location	chr11:9775673-9775674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr11:9775309-9775693	H1-hESC	embryonic stem cell:	n/a	chr11:9775637-9775649 chr11:9775637-9775647
2	FOS	chr11:9775493-9775901	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr11:9775509-9775886	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr11:9775321-9776194	GM12892	blood:	n/a	n/a
5	CEBPB	chr11:9775532-9775895	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr11:9775557-9779107	HUVEC	blood vessel:	n/a	n/a
7	FOS	chr11:9775600-9775920	MCF10A-Er-Src	breast:	n/a	n/a
8	MYC	chr11:9775528-9775962	MCF10A-Er-Src	breast:	n/a	chr11:9775707-9775716
9	FOS	chr11:9775492-9775948	MCF10A-Er-Src	breast:	n/a	n/a
10	RFX5	chr11:9775525-9775781	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr11:9775144-9782147	PANC-1	pancreas:	n/a	n/a
12	RAD21	chr11:9775414-9775721	H1-hESC	embryonic stem cell:	n/a	chr11:9775637-9775649 chr11:9775637-9775647
13	STAT3	chr11:9775593-9775835	MCF10A-Er-Src	breast:	n/a	n/a
14	MYC	chr11:9775585-9775938	MCF10A-Er-Src	breast:	n/a	chr11:9775707-9775716
15	POLR2A	chr11:9775319-9776037	GM12892	blood:	n/a	n/a
16	POLR2A	chr11:9775540-9775944	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr11:9775224-9778035	GM12892	blood:	n/a	n/a
18	MAX	chr11:9775601-9775734	Hela-S3	cervix:	n/a	chr11:9775707-9775716
19	POLR2A	chr11:9775330-9778222	GM12891	blood:	n/a	n/a
20	ATF2	chr11:9775325-9775760	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr11:9775141-9776099	GM12892	blood:	n/a	n/a
22	SMC3	chr11:9775452-9775922	Hela-S3	cervix:	n/a	n/a
23	STAT3	chr11:9775563-9775938	MCF10A-Er-Src	breast:	n/a	n/a
24	CTCF	chr11:9775640-9775790	NHDF-neo	bronchial:	n/a	n/a
25	STAT3	chr11:9775598-9775902	MCF10A-Er-Src	breast:	n/a	n/a
26	RAD21	chr11:9775413-9775800	Hela-S3	cervix:	n/a	chr11:9775637-9775649 chr11:9775637-9775647
27	RAD21	chr11:9775281-9775797	H1-hESC	embryonic stem cell:	n/a	chr11:9775637-9775649 chr11:9775637-9775647

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9775646..9777707-chr11:9778312..9780698,2	MCF-7	breast:
2	chr11:9773431..9776316-chr11:9777677..9779608,2	K562	blood:

Variant related genes	Relation type
SBF2-AS1	TF binding region
ENSG00000245522	Chromatin interaction
ENSG00000246273	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1056593	0.99[ASN][1000 genomes]
rs1056674	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11821544	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11821692	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11825952	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11828354	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1496475	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1532422	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16906967	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1845884	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28607967	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2878800	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3197265	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34696762	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3817010	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55959510	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56029305	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56096143	0.81[ASN][1000 genomes]
rs56340721	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57070018	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57590863	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57650149	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57843161	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57864531	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58073079	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58217715	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58765157	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59070186	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60195226	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60544361	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60548107	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60601382	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60929104	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61059316	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61284089	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61469272	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6483649	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6483650	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6483651	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6483654	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6483655	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6483657	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6483658	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113055	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114514	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7928407	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935267	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7939896	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940708	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7940826	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7946920	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7950075	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs868860	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs868861	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs868862	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1045550	chr11:9718324-9790088	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9742200-9779400	Weak transcription	Fetal Brain Male	brain
2	chr11:9755000-9777600	Weak transcription	Colonic Mucosa	Colon
3	chr11:9758800-9776000	Weak transcription	Brain Germinal Matrix	brain
4	chr11:9761000-9777200	Weak transcription	Fetal Kidney	kidney
5	chr11:9762400-9777200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:9762400-9777400	Weak transcription	Esophagus	oesophagus
7	chr11:9762400-9777400	Weak transcription	Right Ventricle	heart
8	chr11:9762400-9779400	Weak transcription	Liver	Liver
9	chr11:9762400-9779400	Weak transcription	Psoas Muscle	Psoas
10	chr11:9762600-9779200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr11:9762800-9779400	Weak transcription	Fetal Brain Female	brain
12	chr11:9763600-9779400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:9770200-9775800	Weak transcription	Brain Angular Gyrus	brain
14	chr11:9770200-9776400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:9770200-9777000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:9770200-9777000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:9770200-9777600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:9770200-9777600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:9770200-9779200	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:9770200-9779400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:9770200-9779400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:9770200-9779400	Weak transcription	Ovary	ovary
23	chr11:9770200-9779400	Weak transcription	Pancreas	Pancrea
24	chr11:9770200-9779600	Weak transcription	Small Intestine	intestine
25	chr11:9770400-9775800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:9770400-9776600	Weak transcription	Fetal Thymus	thymus
27	chr11:9770400-9777000	Weak transcription	Fetal Lung	lung
28	chr11:9770400-9779200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr11:9770400-9779400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:9770600-9777400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr11:9770800-9775800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:9772400-9775800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:9772400-9777000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:9772400-9777200	Weak transcription	Fetal Stomach	stomach
35	chr11:9772400-9777200	Weak transcription	Spleen	Spleen
36	chr11:9772400-9779200	Weak transcription	Primary T cells from cord blood	blood
37	chr11:9772400-9779400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:9772400-9779400	Weak transcription	Gastric	stomach
39	chr11:9772600-9777000	Weak transcription	Left Ventricle	heart
40	chr11:9772600-9777200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr11:9772600-9777200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:9772800-9776800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr11:9772800-9777000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr11:9773000-9776000	Genic enhancers	NHDF-Ad	bronchial
45	chr11:9773400-9776200	Enhancers	Fetal Intestine Small	intestine
46	chr11:9773400-9776600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:9773600-9775800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:9773600-9776000	Enhancers	HepG2	liver
49	chr11:9773800-9777000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:9773800-9778200	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links