Variant report

Variant	rs360051
Chromosome Location	chr11:9714884-9714885
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9705932..9707759-chr11:9713203..9714958,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10219178	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10770056	0.83[ASN][1000 genomes]
rs12281578	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1496475	1.00[CEU][hapmap]
rs1532422	1.00[CEU][hapmap]
rs16907071	1.00[CEU][hapmap]
rs1836639	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2117698	0.83[ASN][1000 genomes]
rs2117699	0.83[ASN][1000 genomes]
rs2164311	0.80[ASN][1000 genomes]
rs2878800	1.00[CEU][hapmap]
rs360047	0.85[ASN][1000 genomes]
rs360049	0.87[ASN][1000 genomes]
rs360054	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3751001	1.00[CEU][hapmap]
rs4548612	0.91[ASN][1000 genomes]
rs4910489	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4993191	0.83[ASN][1000 genomes]
rs56096143	0.83[EUR][1000 genomes]
rs7113055	1.00[CEU][hapmap]
rs7925177	0.88[ASN][1000 genomes]
rs7932792	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs892851	0.83[ASN][1000 genomes]
rs892852	0.83[ASN][1000 genomes]
rs892856	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9686800-9716400	Weak transcription	Ovary	ovary
2	chr11:9704200-9723600	Weak transcription	HepG2	liver
3	chr11:9709600-9715600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:9710200-9758400	Weak transcription	Psoas Muscle	Psoas
5	chr11:9710400-9732800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:9710600-9717000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:9710600-9722000	Weak transcription	Fetal Brain Female	brain
8	chr11:9711000-9717000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:9711200-9715400	Enhancers	HMEC	breast
10	chr11:9711200-9715400	Enhancers	NHEK	skin
11	chr11:9711200-9715600	Enhancers	Primary hematopoietic stem cells	blood
12	chr11:9711200-9732800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:9711400-9715400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:9711400-9715600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:9711400-9715600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr11:9711400-9715600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:9711400-9715600	Enhancers	Brain Anterior Caudate	brain
18	chr11:9711400-9715800	Weak transcription	Primary T cells from cord blood	blood
19	chr11:9711400-9715800	Enhancers	Brain Hippocampus Middle	brain
20	chr11:9711400-9715800	Weak transcription	Hela-S3	cervix
21	chr11:9711400-9717000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:9711400-9718800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:9711400-9754400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:9711600-9715200	Weak transcription	Fetal Thymus	thymus
25	chr11:9711600-9715200	Weak transcription	Pancreas	Pancrea
26	chr11:9711600-9715400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:9711600-9715600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:9711600-9715600	Enhancers	Brain Cingulate Gyrus	brain
29	chr11:9711600-9715600	Weak transcription	Esophagus	oesophagus
30	chr11:9711600-9715600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:9711600-9715600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr11:9711600-9715600	Weak transcription	Placenta	Placenta
33	chr11:9711600-9715600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:9711600-9715600	Weak transcription	Spleen	Spleen
35	chr11:9711600-9715800	Enhancers	Brain Substantia Nigra	brain
36	chr11:9711600-9716400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:9711600-9716600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:9711600-9716600	Weak transcription	Fetal Stomach	stomach
39	chr11:9711600-9716800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr11:9711600-9723600	Weak transcription	Fetal Lung	lung
41	chr11:9711600-9724000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:9711600-9724400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:9711600-9725800	Weak transcription	HSMMtube	muscle
44	chr11:9711600-9729600	Weak transcription	Fetal Heart	heart
45	chr11:9711600-9730200	Weak transcription	Right Ventricle	heart
46	chr11:9711600-9731400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:9711600-9732800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr11:9711600-9733200	Weak transcription	Aorta	Aorta
49	chr11:9711600-9736600	Weak transcription	Gastric	stomach
50	chr11:9711800-9715600	Weak transcription	Colon Smooth Muscle	Colon

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