Variant report

Variant	rs7925177
Chromosome Location	chr11:9697896-9697897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9696319..9698693-chr11:9700053..9701676,2	K562	blood:
2	chr11:9694330..9696170-chr11:9697340..9699086,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10219178	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10770056	0.82[ASN][1000 genomes]
rs12281578	0.93[ASN][1000 genomes]
rs1836639	0.91[ASN][1000 genomes]
rs2117698	0.83[ASN][1000 genomes]
rs2117699	0.83[ASN][1000 genomes]
rs2164311	0.80[ASN][1000 genomes]
rs360047	0.80[ASN][1000 genomes]
rs360049	0.82[ASN][1000 genomes]
rs360051	0.88[ASN][1000 genomes]
rs360054	0.88[ASN][1000 genomes]
rs4548612	0.96[ASN][1000 genomes]
rs4635070	0.82[ASN][1000 genomes]
rs4910489	0.95[ASN][1000 genomes]
rs4993191	0.83[ASN][1000 genomes]
rs67008130	0.84[ASN][1000 genomes]
rs7932792	0.91[ASN][1000 genomes]
rs892851	0.83[ASN][1000 genomes]
rs892852	0.83[ASN][1000 genomes]
rs892856	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9686600-9702000	Weak transcription	Left Ventricle	heart
2	chr11:9686600-9702600	Weak transcription	Gastric	stomach
3	chr11:9686600-9704600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:9686600-9709600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:9686600-9711200	Weak transcription	Esophagus	oesophagus
6	chr11:9686800-9710800	Weak transcription	Aorta	Aorta
7	chr11:9686800-9716400	Weak transcription	Ovary	ovary
8	chr11:9687200-9702600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:9687200-9705000	Weak transcription	HSMM	muscle
10	chr11:9687200-9709400	Weak transcription	HSMMtube	muscle
11	chr11:9687200-9710200	Weak transcription	Hela-S3	cervix
12	chr11:9687400-9699000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:9687400-9699000	Weak transcription	NHEK	skin
14	chr11:9687400-9702600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr11:9687400-9709200	Weak transcription	HMEC	breast
16	chr11:9687400-9710800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:9687600-9699000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:9687600-9700200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr11:9687800-9703200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:9687800-9708000	Weak transcription	Pancreas	Pancrea
21	chr11:9687800-9709000	Weak transcription	Adipose Nuclei	Adipose
22	chr11:9688000-9702400	Weak transcription	Fetal Stomach	stomach
23	chr11:9688200-9710000	Weak transcription	A549	lung
24	chr11:9689000-9703000	Weak transcription	Fetal Intestine Large	intestine
25	chr11:9689400-9706800	Weak transcription	Placenta	Placenta
26	chr11:9693200-9710000	Weak transcription	Fetal Thymus	thymus
27	chr11:9693800-9702400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:9694200-9702000	Weak transcription	Fetal Intestine Small	intestine
29	chr11:9694200-9702400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:9694400-9703200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr11:9694800-9702400	Weak transcription	Right Ventricle	heart
32	chr11:9694800-9702400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr11:9694800-9709200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:9695000-9703200	Weak transcription	Fetal Heart	heart
35	chr11:9695000-9709200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:9695000-9709400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:9695000-9709400	Weak transcription	NHLF	lung
38	chr11:9695200-9698600	Weak transcription	Osteobl	bone
39	chr11:9695200-9705000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:9695200-9709800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:9695400-9699400	Weak transcription	NH-A	brain
42	chr11:9695400-9709200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:9695600-9700200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:9695600-9700200	Weak transcription	Right Atrium	heart
45	chr11:9696000-9698000	Enhancers	Brain Substantia Nigra	brain
46	chr11:9696000-9703200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:9696200-9698800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:9696200-9709600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:9696600-9698000	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr11:9696600-9700400	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links