Variant report

Variant	rs2011157
Chromosome Location	chr11:67928297-67928298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:67928130..67930692-chr11:67930944..67932522,2	MCF-7	breast:
2	chr11:67919723..67923149-chr11:67927401..67929435,3	K562	blood:
3	chr11:67778899..67781457-chr11:67928106..67930738,2	K562	blood:
4	chr11:67889028..67893013-chr11:67925140..67928666,3	MCF-7	breast:
5	chr11:67926038..67929459-chr11:67934654..67938325,5	MCF-7	breast:
6	chr11:67914668..67916330-chr11:67927349..67929171,2	K562	blood:

Variant related genes	Relation type
ENSG00000255236	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10896298	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10896301	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10896303	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10896304	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10896305	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12225316	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1894204	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2054865	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34236202	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34493482	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4345973	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4930228	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4930229	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4930230	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4930561	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4930563	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4930564	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61890513	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7950452	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2011157	SUV420H1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67913200-67933200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:67914600-67930200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:67915000-67933000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:67915000-67934000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:67915000-67943000	Weak transcription	Right Atrium	heart
6	chr11:67915000-67973800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:67915200-67929000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:67917200-67939400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:67917800-67929000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:67918000-67931400	Weak transcription	HMEC	breast
11	chr11:67918000-67931800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:67918000-67931800	Weak transcription	Hela-S3	cervix
13	chr11:67918000-67933200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:67918800-67936600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:67920200-67928600	Weak transcription	Fetal Kidney	kidney
16	chr11:67920200-67930600	Weak transcription	NHLF	lung
17	chr11:67922000-67937200	Weak transcription	Stomach Mucosa	stomach
18	chr11:67922000-67937400	Weak transcription	Small Intestine	intestine
19	chr11:67922200-67930800	Weak transcription	HepG2	liver
20	chr11:67922400-67933200	Weak transcription	Fetal Brain Male	brain
21	chr11:67922600-67956600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr11:67922800-67933200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:67923400-67928800	Weak transcription	Dnd41	blood
24	chr11:67924000-67933600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr11:67924000-67933800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr11:67924000-67936200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:67924200-67929200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:67924200-67949800	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr11:67924400-67956600	Strong transcription	Fetal Intestine Large	intestine
30	chr11:67924400-67956800	Strong transcription	Primary T cells from cord blood	blood
31	chr11:67924400-67957000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:67924600-67928400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:67924600-67956400	Strong transcription	Fetal Muscle Trunk	muscle
34	chr11:67924600-67956600	Strong transcription	Fetal Muscle Leg	muscle
35	chr11:67924800-67929000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:67924800-67943200	Strong transcription	Brain Substantia Nigra	brain
37	chr11:67925000-67932000	Strong transcription	Fetal Thymus	thymus
38	chr11:67925000-67933000	Strong transcription	Liver	Liver
39	chr11:67925200-67929800	Strong transcription	Aorta	Aorta
40	chr11:67925200-67955000	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr11:67925600-67933200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr11:67925600-67944400	Strong transcription	Fetal Intestine Small	intestine
43	chr11:67925600-67948400	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:67925800-67928400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:67925800-67933000	Weak transcription	HUVEC	blood vessel
46	chr11:67926000-67929000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr11:67926000-67929600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:67926200-67928400	Weak transcription	Brain Germinal Matrix	brain
49	chr11:67926200-67928800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:67926200-67929000	Weak transcription	Pancreas	Pancrea

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