Variant report

Variant	rs7950452
Chromosome Location	chr11:67962407-67962408
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:67959171..67963751-chr11:67979631..67983303,4	MCF-7	breast:
2	chr11:67912718..67914812-chr11:67959774..67962607,2	K562	blood:
3	chr11:67960666..67964269-chr11:67968091..67969838,3	K562	blood:
4	chr11:67958631..67961595-chr11:67962139..67966339,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110066	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10896298	0.86[ASN][1000 genomes]
rs10896301	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896303	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896304	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896305	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12225316	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1894204	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2011157	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2054865	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34236202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34493482	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4345973	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4930228	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4930229	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4930230	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4930561	0.86[ASN][1000 genomes]
rs4930563	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4930564	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61890513	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7950452	SUV420H1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67915000-67973800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:67947400-67971200	Weak transcription	Fetal Kidney	kidney
3	chr11:67947400-67971400	Weak transcription	Spleen	Spleen
4	chr11:67952200-67963600	Weak transcription	Colonic Mucosa	Colon
5	chr11:67952200-67968000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:67952400-67968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:67952600-67977000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:67953000-67976800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:67953400-67967800	Weak transcription	NHDF-Ad	bronchial
10	chr11:67953600-67967600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:67953800-67978600	Weak transcription	Aorta	Aorta
12	chr11:67954000-67976200	Weak transcription	Placenta	Placenta
13	chr11:67954200-67966800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:67954200-67967600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:67954200-67976800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:67954400-67968200	Weak transcription	NH-A	brain
17	chr11:67954400-67976800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:67954600-67968200	Weak transcription	Dnd41	blood
19	chr11:67954600-67971200	Weak transcription	Brain Germinal Matrix	brain
20	chr11:67954600-67976600	Weak transcription	Thymus	Thymus
21	chr11:67956400-67966000	Weak transcription	Fetal Intestine Small	intestine
22	chr11:67956400-67978600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:67956600-67966600	Weak transcription	Fetal Intestine Large	intestine
24	chr11:67956600-67966800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:67956600-67967200	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:67956600-67968200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:67956600-67969800	Weak transcription	Hela-S3	cervix
28	chr11:67956800-67971600	Weak transcription	Fetal Thymus	thymus
29	chr11:67957000-67968000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:67957000-67968400	Weak transcription	Fetal Brain Female	brain
31	chr11:67957000-67973400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:67957000-67973600	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr11:67957400-67966200	Weak transcription	Primary B cells from cord blood	blood
34	chr11:67957600-67967800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:67957600-67973400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:67957600-67976200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:67957600-67976400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:67957800-67971600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:67958000-67966800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:67958200-67964000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:67958400-67964000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr11:67958400-67965600	Weak transcription	Esophagus	oesophagus
43	chr11:67958400-67967600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr11:67958600-67962600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:67958600-67966000	Weak transcription	Adipose Nuclei	Adipose
46	chr11:67958600-67973800	Weak transcription	Fetal Stomach	stomach
47	chr11:67959000-67965600	Weak transcription	Lung	lung
48	chr11:67959000-67972600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:67959200-67976400	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr11:67959600-67963200	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links