Variant report

Variant	rs201167991
Chromosome Location	chr15:82554226-82554227
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:82554018-82555291	U87	brain:	n/a	n/a
2	ELK4	chr15:82554215-82555334	Hela-S3	cervix:	n/a	chr15:82555110-82555121
3	RFX5	chr15:82554225-82554549	Hela-S3	cervix:	n/a	n/a
4	GTF2F1	chr15:82554209-82554694	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr15:82554202-82555134	GM12892	blood:	n/a	n/a
6	MXI1	chr15:82553678-82556137	SK-N-SH	brain:	n/a	chr15:82555149-82555164 chr15:82555151-82555166
7	FOS	chr15:82553792-82554566	MCF10A-Er-Src	breast:	n/a	chr15:82553933-82553944
8	TBP	chr15:82554211-82554595	Hela-S3	cervix:	n/a	n/a
9	RCOR1	chr15:82554185-82555306	K562	blood:	n/a	n/a
10	JUND	chr15:82554202-82554574	K562	blood:	n/a	n/a
11	POLR2A	chr15:82554186-82554624	U87	brain:	n/a	n/a
12	FOS	chr15:82553810-82554563	MCF10A-Er-Src	breast:	n/a	chr15:82553933-82553944
13	POLR2A	chr15:82554153-82555334	Hela-S3	cervix:	n/a	n/a
14	USF1	chr15:82554223-82554994	A549	lung:	n/a	chr15:82554950-82554966 chr15:82554638-82554649 chr15:82554640-82554649 chr15:82554639-82554648 chr15:82554640-82554649 chr15:82554634-82554655
15	FOS	chr15:82554136-82554540	MCF10A-Er-Src	breast:	n/a	n/a
16	POLR2A	chr15:82554209-82554519	K562	blood:	n/a	n/a
17	FOSL2	chr15:82554147-82554601	HepG2	liver:	n/a	n/a
18	MYC	chr15:82554160-82554540	MCF10A-Er-Src	breast:	n/a	n/a
19	POLR2A	chr15:82554149-82555291	U87	brain:	n/a	n/a
20	FOSL2	chr15:82554209-82554459	A549	lung:	n/a	n/a
21	POLR2A	chr15:82554141-82555329	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr15:82554146-82555466	K562	blood:	n/a	n/a
23	POLR2A	chr15:82554224-82555384	Hela-S3	cervix:	n/a	n/a
24	ELF1	chr15:82554211-82554546	K562	blood:	n/a	n/a
25	FOXA2	chr15:82554191-82554625	A549	lung:	n/a	chr15:82554259-82554271
26	RCOR1	chr15:82553758-82555446	IMR90	lung:	n/a	n/a
27	POLR2A	chr15:82553756-82555369	IMR90	lung:	n/a	n/a
28	GABPA	chr15:82554209-82554483	MCF-7	breast:	n/a	n/a
29	POLR2A	chr15:82554221-82554535	K562	blood:	n/a	n/a
30	JUND	chr15:82554214-82554538	HepG2	liver:	n/a	n/a
31	POLR2A	chr15:82554215-82555317	MCF-7	breast:	n/a	n/a
32	MAX	chr15:82554218-82555394	NB4	blood:	n/a	chr15:82554639-82554650 chr15:82554640-82554649
33	POLR2A	chr15:82553913-82554239	SK-N-SH	brain:	n/a	n/a
34	STAT3	chr15:82554222-82554419	Hela-S3	cervix:	n/a	n/a
35	RCOR1	chr15:82554223-82555377	Hela-S3	cervix:	n/a	n/a
36	JUN	chr15:82554219-82554551	K562	blood:	n/a	n/a
37	POLR2A	chr15:82554079-82555331	Hela-S3	cervix:	n/a	n/a
38	HCFC1	chr15:82553781-82555649	Hela-S3	cervix:	n/a	n/a
39	MAZ	chr15:82554200-82555501	IMR90	lung:	n/a	chr15:82554639-82554650 chr15:82554640-82554649
40	FOS	chr15:82553951-82554546	MCF10A-Er-Src	breast:	n/a	n/a
41	CEBPB	chr15:82554022-82554526	IMR90	lung:	n/a	n/a
42	MAX	chr15:82554183-82555423	K562	blood:	n/a	chr15:82554639-82554650 chr15:82554640-82554649
43	GABPA	chr15:82554202-82554596	Hela-S3	cervix:	n/a	n/a
44	FOSL2	chr15:82554217-82554576	HepG2	liver:	n/a	n/a
45	HCFC1	chr15:82554217-82555574	K562	blood:	n/a	n/a
46	NR2F2	chr15:82554012-82555370	K562	blood:	n/a	chr15:82555081-82555096
47	TAF1	chr15:82554158-82554664	Hela-S3	cervix:	n/a	n/a
48	JUND	chr15:82554214-82554475	HepG2	liver:	n/a	n/a
49	JUND	chr15:82554190-82554551	HepG2	liver:	n/a	n/a
50	POLR2A	chr15:82554217-82555423	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:242011083..242011828-chr15:82554163..82555047,2	Hela-S3	cervix:
2	chr15:82511968..82514595-chr15:82553137..82554662,2	K562	blood:

Variant related genes	Relation type
FAM154B	TF binding region
ENSG00000174371	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457212	chr15:82454283-82573255	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv570243	chr15:82454283-82573255	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv457213	chr15:82456227-82573255	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv570244	chr15:82456227-82573255	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv570245	chr15:82456227-82591082	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1041040	chr15:82465124-82606410	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv1801737	chr15:82468455-82589044	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv570246	chr15:82485707-82581264	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1041506	chr15:82496164-82581427	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv1798145	chr15:82506790-82581264	Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv904440	chr15:82524544-82591082	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv904441	chr15:82532963-82580736	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv904442	chr15:82540174-82571046	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv1054025	chr15:82540486-83058214	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
15	nsv904443	chr15:82553472-82571780	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82520200-82554400	Weak transcription	Esophagus	oesophagus
2	chr15:82538200-82554400	Weak transcription	Lung	lung
3	chr15:82541000-82554400	Weak transcription	Spleen	Spleen
4	chr15:82547000-82554400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:82552400-82556800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:82552800-82554400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr15:82552800-82554400	Enhancers	Fetal Heart	heart
8	chr15:82553000-82554400	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr15:82553200-82554400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:82553200-82554400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:82553200-82554400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr15:82553200-82554400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:82553200-82554600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:82553400-82554400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:82553400-82554400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr15:82553400-82554400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr15:82553400-82554600	Flanking Active TSS	Fetal Brain Female	brain
18	chr15:82553400-82555400	Active TSS	Right Ventricle	heart
19	chr15:82553400-82555800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:82553400-82555800	Active TSS	Psoas Muscle	Psoas
21	chr15:82553400-82555800	Active TSS	HSMMtube	muscle
22	chr15:82553600-82554400	Weak transcription	Gastric	stomach
23	chr15:82553600-82555600	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr15:82553600-82555600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:82553600-82555800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr15:82553600-82556000	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr15:82553800-82554400	Enhancers	Brain Substantia Nigra	brain
28	chr15:82553800-82554400	Weak transcription	Small Intestine	intestine
29	chr15:82553800-82554400	Weak transcription	Stomach Mucosa	stomach
30	chr15:82553800-82554600	Flanking Active TSS	Primary T cells from cord blood	blood
31	chr15:82553800-82554600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:82553800-82554600	Flanking Active TSS	HUVEC	blood vessel
33	chr15:82553800-82554600	Flanking Active TSS	NH-A	brain
34	chr15:82553800-82554800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:82553800-82555800	Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr15:82553800-82556200	Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr15:82554000-82554400	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr15:82554000-82554400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr15:82554000-82554400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr15:82554000-82554400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
41	chr15:82554000-82554800	Flanking Active TSS	Primary hematopoietic stem cells	blood
42	chr15:82554000-82555600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:82554000-82555600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:82554000-82555600	Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr15:82554000-82555600	Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr15:82554000-82555600	Active TSS	Fetal Intestine Large	intestine
47	chr15:82554000-82555600	Active TSS	Right Atrium	heart
48	chr15:82554000-82555600	Active TSS	Stomach Smooth Muscle	stomach
49	chr15:82554000-82555600	Active TSS	HMEC	breast
50	chr15:82554000-82555600	Active TSS	HSMM	muscle

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